UHGV-0052018

Genome information

Genome length 36,621 bps

CDS count 56

Completeness 81.42% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052018
vOTU ID	vOTU-025355
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64175
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.1
Jumbo phage	No

Genome content
Genome length	36,621 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.02%
Average CDS length	604.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052018_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0052018_1	PHROG	phrog_6745	endolysin	lysis
UHGV-0052018_1	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0052018_1	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0052018_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0052018_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0052018_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0052018_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0052018_1	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0052018_2	Structural annotation	NF040910	NA	NA
UHGV-0052018_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0052018_4	PHROG	phrog_819	tail protein	tail
UHGV-0052018_4	UniRef90	UniRef90_A0A6L8SWW0	Fibronectin type-III domain-containing protein	NA
UHGV-0052018_4	eggNOG-mapper	1508644.SFBmNL_00815	NA	NA
UHGV-0052018_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052018_4	Pfam	PF19789	NA	DUF6273
UHGV-0052018_4	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0052018_5	PHROG	phrog_18444	NA	unknown function
UHGV-0052018_6	PHROG	phrog_6616	tail protein	tail
UHGV-0052018_6	UniRef90	UniRef90_UPI001D07A50C	collagen-like protein	NA
UHGV-0052018_6	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0052018_6	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0052018_7	PHROG	phrog_1194	NA	unknown function
UHGV-0052018_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0052018_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0052018_8	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0052018_8	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0052018_8	COG	COG1511	NA	NA
UHGV-0052018_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0052018_9	PHROG	phrog_706	NA	unknown function
UHGV-0052018_9	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0052018_9	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0052018_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0052018_9	Structural annotation	PF06854	NA	NA
UHGV-0052018_10	PHROG	phrog_11299	NA	unknown function
UHGV-0052018_10	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0052018_10	Structural annotation	PF10666	NA	NA
UHGV-0052018_11	PHROG	phrog_22984	NA	unknown function
UHGV-0052018_12	PHROG	phrog_21718	NA	unknown function
UHGV-0052018_12	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0052018_13	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0052018_13	AcrCatalog	cluster_81672	NA	NA
UHGV-0052018_14	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052018_14	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0052018_14	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0052018_15	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0052018_15	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0052018_16	PHROG	phrog_3754	NA	unknown function
UHGV-0052018_16	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0052018_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0052018_17	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0052018_17	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0052018_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0052018_17	COG	COG2369	NA	NA
UHGV-0052018_17	Structural annotation	PF06152	NA	NA
UHGV-0052018_18	PHROG	phrog_16164	NA	unknown function
UHGV-0052018_18	UniRef90	UniRef90_R6RVF6	SGNH_hydro domain-containing protein	NA
UHGV-0052018_18	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0052018_18	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0052018_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0052018_19	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0052018_19	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0052018_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0052018_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052018_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0052018_21	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0052018_21	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0052018_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0052018_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0052018_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052018_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0052018_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0052018_22	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0052018_22	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0052018_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0052018_22	Structural annotation	PF16677	NA	NA
UHGV-0052018_25	PHROG	phrog_38832	NA	unknown function
UHGV-0052018_25	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0052018_30	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0052018_30	AcrCatalog	cluster_11670	NA	NA
UHGV-0052018_31	PHROG	phrog_25456	NA	unknown function
UHGV-0052018_31	Structural annotation	PF17888	NA	NA
UHGV-0052018_32	Structural annotation	NF041070	NA	NA
UHGV-0052018_34	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0052018_34	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0052018_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0052018_34	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0052018_35	Structural annotation	NF010187	NA	NA
UHGV-0052018_36	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0052018_36	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0052018_36	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0052018_36	Pfam	PF06048	NA	DUF927
UHGV-0052018_36	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0052018_36	COG	COG5519	NA	NA
UHGV-0052018_36	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0052018_37	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0052018_37	PHROG	phrog_11992	NA	unknown function
UHGV-0052018_37	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0052018_37	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0052018_37	PADLOC	drt-cluster192	DRT	DRT
UHGV-0052018_37	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0052018_37	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0052018_37	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0052018_38	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0052018_38	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0052018_38	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0052018_38	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0052018_38	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0052018_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052018_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052018_39	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0052018_39	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0052018_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052018_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052018_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052018_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052018_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0052018_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052018_40	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0052018_40	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0052018_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0052018_40	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0052018_41	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0052018_42	Structural annotation	NF001645	NA	NA
UHGV-0052018_47	PHROG	phrog_6058	NA	unknown function
UHGV-0052018_47	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0052018_47	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0052018_48	PHROG	phrog_7964	NA	unknown function
UHGV-0052018_48	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0052018_48	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0052018_48	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0052018_48	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0052018_48	Structural annotation	MF_01691, NF040481, COG2171	NA	NA
UHGV-0052018_51	UniRef90	UniRef90_A0A373NQX7	XRE family transcriptional regulator	NA
UHGV-0052018_51	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0052018_51	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0052018_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0052018_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052018_52	UniRef90	UniRef90_UPI000E51662C	helix-turn-helix domain-containing protein	NA
UHGV-0052018_52	eggNOG-mapper	1140001.I571_01121	Peptidase S24-like	NA
UHGV-0052018_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052018_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052018_52	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0052018_54	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-0052018_54	COG	COG2314	NA	NA
UHGV-0052018_55	KOfam	K14059	int; integrase	NA
UHGV-0052018_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0052018_55	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0052018_55	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0052018_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052018_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052018_55	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0052018_56	KOfam	K06396	spoIIIAG; stage III sporulation protein AG	NA
UHGV-0052018_56	UniRef90	UniRef90_A0A173WQM3	Stage III sporulation protein AG	NA
UHGV-0052018_56	eggNOG-mapper	1121115.AXVN01000006_gene2144	COG NOG11553 non supervised orthologous group	NA