UHGV-0052096

Genome information

vOTU vOTU-071954

Genome length 33,285 bps

CDS count 51

Completeness 90.49% (high-quality)

geNomad score 0.9622

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052096
vOTU ID	vOTU-071954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_34834
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9622
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.28
Jumbo phage	No

Genome content
Genome length	33,285 bps
GC content	26.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.97%
Average CDS length	622.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052096_1	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0052096_1	UniRef90	UniRef90_A0A7C3YQ95	DnaD domain protein	NA
UHGV-0052096_1	eggNOG-mapper	1121428.DESHY_10198___1	PFAM Replication initiation and membrane attachment protein (DnaB)	NA
UHGV-0052096_1	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0052096_1	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0052096_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0052096_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052096_2	UniRef90	UniRef90_R5A0M1	Erf family protein	NA
UHGV-0052096_2	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0052096_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0052096_2	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0052096_3	PHROG	phrog_674	NA	unknown function
UHGV-0052096_3	UniRef90	UniRef90_A0A395V658	NA	NA
UHGV-0052096_3	eggNOG-mapper	754027.HMPREF9554_00708	NA	NA
UHGV-0052096_3	Pfam	PF07083	NA	DUF1351
UHGV-0052096_3	Structural annotation	PF07083	NA	NA
UHGV-0052096_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052096_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052096_6	UniRef90	UniRef90_R6AJ00	Single-stranded DNA-binding protein	NA
UHGV-0052096_6	eggNOG-mapper	713605.ADHG01000001_gene405	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0052096_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052096_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052096_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052096_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052096_6	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0052096_7	KOfam	K06940	NA	NA
UHGV-0052096_7	PHROG	phrog_32498	NA	unknown function
UHGV-0052096_7	UniRef90	UniRef90_A0A1W7ABU4	Flagellin N-methylase	NA
UHGV-0052096_7	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0052096_7	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0052096_7	Structural annotation	PF03692	NA	NA
UHGV-0052096_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0052096_8	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0052096_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0052096_9	PHROG	phrog_4973	NA	unknown function
UHGV-0052096_9	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0052096_9	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0052096_11	Structural annotation	PF10654	NA	NA
UHGV-0052096_13	PHROG	phrog_7445	NA	unknown function
UHGV-0052096_13	UniRef90	UniRef90_A0A4R3TDL2	PcfK-like protein	NA
UHGV-0052096_13	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-0052096_13	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0052096_13	Structural annotation	PF14058	NA	NA
UHGV-0052096_14	PHROG	phrog_8470	NA	unknown function
UHGV-0052096_14	UniRef90	UniRef90_UPI00156D7CD7	PcfJ domain-containing protein	NA
UHGV-0052096_14	eggNOG-mapper	742735.HMPREF9467_00863	PcfJ-like protein	NA
UHGV-0052096_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0052096_14	Structural annotation	PF14284	NA	NA
UHGV-0052096_15	PHROG	phrog_11947	NA	unknown function
UHGV-0052096_22	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0052096_22	eggNOG-mapper	1110697.NCAST_08_01370	NA	NA
UHGV-0052096_23	Structural annotation	PF15456	NA	NA
UHGV-0052096_25	Structural annotation	PF10922	NA	NA
UHGV-0052096_26	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-0052096_26	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0052096_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052096_27	PHROG	phrog_10250	NA	unknown function
UHGV-0052096_27	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0052096_27	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0052096_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0052096_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0052096_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0052096_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052096_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0052096_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0052096_28	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0052096_28	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0052096_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0052096_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0052096_29	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0052096_29	eggNOG-mapper	1125725.HMPREF1325_1324	Phage minor capsid protein 2	NA
UHGV-0052096_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0052096_29	COG	COG2369	NA	NA
UHGV-0052096_29	Structural annotation	PF06152	NA	NA
UHGV-0052096_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0052096_30	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0052096_30	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0052096_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0052096_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0052096_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0052096_31	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0052096_31	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0052096_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0052096_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0052096_33	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0052096_34	PHROG	phrog_3366	NA	unknown function
UHGV-0052096_34	Structural annotation	PF20536	NA	NA
UHGV-0052096_35	UniRef90	UniRef90_UPI001D069E73	minor capsid protein	NA
UHGV-0052096_35	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0052096_35	Structural annotation	PF11114	NA	NA
UHGV-0052096_36	PHROG	phrog_3266	tail completion	connector
UHGV-0052096_36	Structural annotation	PF12691	NA	NA
UHGV-0052096_37	PHROG	phrog_3099	NA	unknown function
UHGV-0052096_37	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0052096_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0052096_38	Structural annotation	PF10666	NA	NA
UHGV-0052096_39	PHROG	phrog_706	NA	unknown function
UHGV-0052096_39	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0052096_39	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0052096_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0052096_39	Structural annotation	PF06854	NA	NA
UHGV-0052096_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0052096_40	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0052096_40	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0052096_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0052096_41	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0052096_42	PHROG	phrog_2929	tail fiber protein	tail
UHGV-0052096_42	eggNOG-mapper	1141133.J9PVK4_9CAUD	NA	NA
UHGV-0052096_42	Structural annotation	PF04862, PF05113, NF033848, NF033675, COG4379	NA	NA
UHGV-0052096_43	PHROG	phrog_372	tail protein	tail
UHGV-0052096_43	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0052096_43	eggNOG-mapper	1308863.U5J9V2_9CAUD	NA	NA
UHGV-0052096_43	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0052096_44	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0052096_48	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0052096_48	PHROG	phrog_6700	endolysin	lysis
UHGV-0052096_48	UniRef90	UniRef90_A0A1H5T3R4	Peptidase family M23	NA
UHGV-0052096_48	eggNOG-mapper	1101190.ARWB01000001_gene3412	Peptidase family M23	NA
UHGV-0052096_48	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0052096_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0052096_48	Structural annotation	PF18342, NF033202, COG4991, COG3942	NA	NA
UHGV-0052096_49	PHROG	phrog_7566	NA	unknown function
UHGV-0052096_50	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0052096_50	PHROG	phrog_6700	endolysin	lysis
UHGV-0052096_50	eggNOG-mapper	163908.KB235896_gene1553	Domains in Na-Ca exchangers and integrin-beta4	NA
UHGV-0052096_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0052096_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0052096_50	Structural annotation	PF18342, NF033202, COG4991, COG3942	NA	NA
UHGV-0052096_51	KOfam	K19002	mgs, bgsB; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]	NA
UHGV-0052096_51	UniRef90	UniRef90_R5MV79	Putative glycosyltransferase	NA
UHGV-0052096_51	eggNOG-mapper	1408416.JNJT01000014_gene278	Glycosyltransferase Family 4	NA
UHGV-0052096_51	Pfam	PF13439	Glycosyltransferase Family 4	Glyco_transf_4
UHGV-0052096_51	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA