UHGV-0052098

Genome information

Genome length 33,290 bps

CDS count 68

Completeness 86.88% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052098
vOTU ID	vOTU-021078
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_34833
BioSample	SAMEA2157972
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.42
Jumbo phage	No

Genome content
Genome length	33,290 bps
GC content	42.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.46%
Average CDS length	456.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052098_1	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0052098_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0052098_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052098_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0052098_2	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0052098_2	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0052098_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0052098_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0052098_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0052098_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0052098_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0052098_3	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-0052098_3	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0052098_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0052098_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0052098_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0052098_4	KOfam	K06904	NA	NA
UHGV-0052098_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0052098_4	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0052098_4	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0052098_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0052098_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0052098_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0052098_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0052098_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0052098_5	UniRef90	UniRef90_A0A1Y4UTW1	Phage major capsid protein	NA
UHGV-0052098_5	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0052098_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0052098_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0052098_5	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0052098_7	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0052098_7	eggNOG-mapper	1536774.H70357_10640	NA	NA
UHGV-0052098_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0052098_8	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0052098_8	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0052098_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0052098_9	Structural annotation	TIGR01725	NA	NA
UHGV-0052098_10	Structural annotation	PF05657	NA	NA
UHGV-0052098_11	PHROG	phrog_88	major tail protein	tail
UHGV-0052098_11	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0052098_11	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0052098_11	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0052098_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0052098_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0052098_13	PHROG	phrog_23464	NA	unknown function
UHGV-0052098_13	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0052098_13	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0052098_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0052098_13	Structural annotation	PF06120	NA	NA
UHGV-0052098_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0052098_14	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0052098_14	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0052098_14	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0052098_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0052098_15	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0052098_15	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0052098_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0052098_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0052098_16	PHROG	phrog_1220	head protein	head and packaging
UHGV-0052098_16	eggNOG-mapper	931626.Awo_c34980	COG NOG18825 non supervised orthologous group	NA
UHGV-0052098_16	Structural annotation	PF20747	NA	NA
UHGV-0052098_18	KOfam	K14059	int; integrase	NA
UHGV-0052098_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0052098_18	UniRef90	UniRef90_A0A4Y9AD35	Site-specific integrase	NA
UHGV-0052098_18	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-0052098_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052098_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052098_18	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0052098_19	PHROG	phrog_87	metallo-protease	other
UHGV-0052098_19	UniRef90	UniRef90_A0A6A7KAL1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0052098_19	eggNOG-mapper	1536769.P40081_00955	IrrE N-terminal-like domain	NA
UHGV-0052098_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0052098_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0052098_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0052098_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052098_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052098_20	UniRef90	UniRef90_A0A1I2E7K8	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052098_20	eggNOG-mapper	457421.CBFG_03225	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0052098_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052098_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052098_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0052098_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0052098_21	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0052098_21	UniRef90	UniRef90_A0A0J0V6A7	XRE family transcriptional regulator	NA
UHGV-0052098_21	eggNOG-mapper	1158602.I590_02949	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052098_21	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052098_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052098_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052098_22	eggNOG-mapper	1462527.CCDM010000010_gene482	NA	NA
UHGV-0052098_22	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0052098_24	PHROG	phrog_22529	NA	unknown function
UHGV-0052098_24	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0052098_24	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0052098_24	Pfam	PF06725	3D domain	3D
UHGV-0052098_24	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0052098_24	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0052098_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052098_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052098_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0052098_28	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0052098_28	UniRef90	UniRef90_UPI00164BA94B	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0052098_28	eggNOG-mapper	1235802.C823_06033	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0052098_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0052098_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0052098_28	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0052098_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0052098_29	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052098_29	UniRef90	UniRef90_UPI00082FB90B	HNH endonuclease	NA
UHGV-0052098_29	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0052098_30	PHROG	phrog_5781	NA	unknown function
UHGV-0052098_30	UniRef90	UniRef90_A0A845LXF0	NA	NA
UHGV-0052098_30	eggNOG-mapper	887929.HMP0721_1274	NA	NA
UHGV-0052098_30	Pfam	PF14359	NA	DUF4406
UHGV-0052098_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0052098_30	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0052098_31	eggNOG-mapper	203119.Cthe_2469	phage transcriptional regulator, RinA family	NA
UHGV-0052098_31	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0052098_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-0052098_32	UniRef90	UniRef90_UPI001B2E6258	NA	NA
UHGV-0052098_32	eggNOG-mapper	469604.HMPREF0946_01115	NA	NA
UHGV-0052098_32	Pfam	PF11753	NA	DUF3310
UHGV-0052098_32	Structural annotation	PF11753	NA	NA
UHGV-0052098_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052098_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052098_34	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0052098_34	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0052098_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052098_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052098_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052098_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052098_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0052098_37	PHROG	phrog_7839	NA	unknown function
UHGV-0052098_37	eggNOG-mapper	1410650.JHWL01000003_gene2844	NA	NA
UHGV-0052098_48	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0052098_48	UniRef90	UniRef90_A0A8D9CD32	Nucleoside triphosphate pyrophosphohydrolase	NA
UHGV-0052098_48	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0052098_48	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0052098_51	Structural annotation	PF11337	NA	NA
UHGV-0052098_53	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0052098_53	UniRef90	UniRef90_A0A3D2D5X9	DNA modification methylase (Fragment)	NA
UHGV-0052098_53	eggNOG-mapper	439292.Bsel_3014	PFAM DNA methylase N-4 N-6 domain protein	NA
UHGV-0052098_53	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0052098_53	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052098_53	COG	COG0863	DNA modification methylase	NA
UHGV-0052098_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0052098_54	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0052098_54	UniRef90	UniRef90_A0A7C6N6B4	DNA modification methylase	NA
UHGV-0052098_54	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0052098_54	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0052098_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0052098_54	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0052098_55	PHROG	phrog_4105	NA	unknown function
UHGV-0052098_56	PHROG	phrog_13256	NA	unknown function
UHGV-0052098_56	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0052098_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052098_58	PHROG	phrog_435	endolysin	lysis
UHGV-0052098_58	UniRef90	UniRef90_UPI001655B953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052098_58	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0052098_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0052098_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052098_58	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0052098_59	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0052098_59	eggNOG-mapper	469618.FVAG_00793	transposase activity	NA
UHGV-0052098_59	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0052098_59	Structural annotation	PF07141	NA	NA
UHGV-0052098_60	PHROG	phrog_19111	NA	unknown function
UHGV-0052098_60	eggNOG-mapper	1274374.CBLK010000060_gene508	nuclear chromosome segregation	NA
UHGV-0052098_60	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0052098_61	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0052098_61	Structural annotation	NF040910	NA	NA
UHGV-0052098_62	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0052098_62	PHROG	phrog_18593	NA	unknown function
UHGV-0052098_62	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0052098_62	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0052098_62	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0052098_62	Structural annotation	PF14600	NA	NA
UHGV-0052098_63	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0052098_63	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0052098_63	eggNOG-mapper	927704.SELR_18240	adenylate kinase activity	NA
UHGV-0052098_63	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0052098_63	Pfam	PF13671	AAA domain	AAA_33
UHGV-0052098_63	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-0052098_63	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0052098_65	eggNOG-mapper	574375.BAGA_11905	NA	NA
UHGV-0052098_68	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0052098_68	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0052098_68	eggNOG-mapper	547228.M5AC15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0052098_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen