UHGV-0052246

Genome information

Genome length 23,719 bps

CDS count 38

Completeness 50.24% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052246
vOTU ID	vOTU-021662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51881
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.82
Jumbo phage	No

Genome content
Genome length	23,719 bps
GC content	61.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	87.93%
Average CDS length	555.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052246_1	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052246_1	UniRef90	UniRef90_A0A0U2WL90	DnaD domain-containing protein	NA
UHGV-0052246_1	eggNOG-mapper	1122917.KB899659_gene5710	Replication initiation and membrane attachment	NA
UHGV-0052246_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052246_2	UniRef90	UniRef90_UPI0011CB51AD	excisionase family DNA-binding protein	NA
UHGV-0052246_2	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0052246_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0052246_2	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0052246_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0052246_3	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0052246_3	UniRef90	UniRef90_A0A1Y4HX28	HTH cro/C1-type domain-containing protein	NA
UHGV-0052246_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052246_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052246_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052246_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052246_4	UniRef90	UniRef90_A0A1Y4HX95	HTH cro/C1-type domain-containing protein	NA
UHGV-0052246_4	eggNOG-mapper	1449343.JQLQ01000002_gene1558	transcriptional	NA
UHGV-0052246_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052246_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052246_5	KOfam	K14059	int; integrase	NA
UHGV-0052246_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0052246_5	UniRef90	UniRef90_A0A1Y4HVA0	Tyr recombinase domain-containing protein	NA
UHGV-0052246_5	eggNOG-mapper	1291050.JAGE01000002_gene3375	Belongs to the 'phage' integrase family	NA
UHGV-0052246_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0052246_5	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0052246_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052246_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052246_5	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0052246_6	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0052246_6	UniRef90	UniRef90_A0A1Y4HV84	HTH cro/C1-type domain-containing protein	NA
UHGV-0052246_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052246_7	UniRef90	UniRef90_D9PHN6	Plasmid related protein	NA
UHGV-0052246_7	eggNOG-mapper	1218076.BAYB01000042_gene5716	NA	NA
UHGV-0052246_8	UniRef90	UniRef90_A0A1Y3R914	DNA-binding protein	NA
UHGV-0052246_8	eggNOG-mapper	1408306.JHXX01000004_gene307	PD-(D/E)XK nuclease superfamily	NA
UHGV-0052246_8	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0052246_9	UniRef90	UniRef90_A0A416SL40	tRNA (Uracil-5-)-methyltransferase	NA
UHGV-0052246_9	eggNOG-mapper	1291050.JAGE01000002_gene3394	NA	NA
UHGV-0052246_11	PHROG	phrog_20233	NA	unknown function
UHGV-0052246_11	eggNOG-mapper	1203606.HMPREF1526_01932	NA	NA
UHGV-0052246_12	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0052246_12	UniRef90	UniRef90_UPI000B49D365	protoporphyrinogen oxidase	NA
UHGV-0052246_12	eggNOG-mapper	1519439.JPJG01000059_gene1918	NA	NA
UHGV-0052246_12	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0052246_13	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0052246_13	UniRef90	UniRef90_UPI001D06EFA4	serine/arginine repetitive matrix protein 2	NA
UHGV-0052246_13	eggNOG-mapper	552398.HMPREF0866_01619	NA	NA
UHGV-0052246_13	Structural annotation	PF06763	NA	NA
UHGV-0052246_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0052246_14	UniRef90	UniRef90_A0A3A9CYU1	NA	NA
UHGV-0052246_14	eggNOG-mapper	552398.HMPREF0866_01620	NA	NA
UHGV-0052246_14	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0052246_15	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0052246_15	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0052246_15	UniRef90	UniRef90_A0A417HQP2	Methyltransferase	NA
UHGV-0052246_15	eggNOG-mapper	1519439.JPJG01000059_gene1915	DNA methylase	NA
UHGV-0052246_15	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0052246_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052246_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0052246_15	COG	COG0863	DNA modification methylase	NA
UHGV-0052246_15	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG4725, COG1475	NA	NA
UHGV-0052246_16	Structural annotation	PF00684	NA	NA
UHGV-0052246_17	PHROG	phrog_5984	NA	unknown function
UHGV-0052246_17	eggNOG-mapper	1203606.HMPREF1526_01893	NA	NA
UHGV-0052246_17	Structural annotation	PF19561	NA	NA
UHGV-0052246_18	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0052246_18	eggNOG-mapper	552398.HMPREF0866_01622	NA	NA
UHGV-0052246_19	PHROG	phrog_1374	NA	unknown function
UHGV-0052246_19	eggNOG-mapper	1519439.JPJG01000059_gene1913	NA	NA
UHGV-0052246_20	PHROG	phrog_23707	NA	unknown function
UHGV-0052246_20	eggNOG-mapper	552398.HMPREF0866_01624	NA	NA
UHGV-0052246_20	Structural annotation	PF08325, NF003339	NA	NA
UHGV-0052246_21	PHROG	phrog_1029	NA	unknown function
UHGV-0052246_21	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0052246_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0052246_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0052246_22	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0052246_22	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0052246_23	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0052246_24	PHROG	phrog_1123	NA	unknown function
UHGV-0052246_24	UniRef90	UniRef90_R6TS56	Sensory box histidine kinase/response regulator C-part	NA
UHGV-0052246_24	eggNOG-mapper	552398.HMPREF0866_01628	NA	NA
UHGV-0052246_24	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0052246_25	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0052246_25	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0052246_25	UniRef90	UniRef90_A0A417HQJ2	Modification methylase MunI	NA
UHGV-0052246_25	eggNOG-mapper	552398.HMPREF0866_01629	Belongs to the MT-A70-like family	NA
UHGV-0052246_25	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0052246_25	Pfam	PF05063	MT-A70	MT-A70
UHGV-0052246_25	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0052246_25	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0052246_26	KOfam	K03700	recU; recombination protein U	NA
UHGV-0052246_26	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052246_26	UniRef90	UniRef90_F4XCR3	Holliday junction resolvase RecU	NA
UHGV-0052246_26	eggNOG-mapper	552398.HMPREF0866_01630	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0052246_26	Pfam	PF03838	Recombination protein U	RecU
UHGV-0052246_26	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0052246_26	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0052246_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0052246_27	UniRef90	UniRef90_UPI0008F95C46	NA	NA
UHGV-0052246_27	eggNOG-mapper	552398.HMPREF0866_01632	NA	NA
UHGV-0052246_27	Pfam	PF14359	NA	DUF4406
UHGV-0052246_27	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0052246_28	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0052246_28	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0052246_28	Structural annotation	PF12261, MF_02210, NF040502, COG1247	NA	NA
UHGV-0052246_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0052246_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0052246_29	UniRef90	UniRef90_F4XCR6	AAA domain-containing protein	NA
UHGV-0052246_29	eggNOG-mapper	1519439.JPJG01000051_gene719	DNA replication protein	NA
UHGV-0052246_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0052246_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0052246_29	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0052246_30	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052246_30	UniRef90	UniRef90_A0A509ENP9	Replication initiation protein	NA
UHGV-0052246_30	eggNOG-mapper	1519439.JPJG01000051_gene720	HNH endonuclease	NA
UHGV-0052246_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052246_30	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0052246_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052246_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052246_31	UniRef90	UniRef90_F4XCR8	Single-stranded DNA-binding protein	NA
UHGV-0052246_31	eggNOG-mapper	552398.HMPREF0866_01635	Single-strand binding protein family	NA
UHGV-0052246_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052246_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052246_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052246_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052246_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0052246_32	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052246_32	UniRef90	UniRef90_A0A1Q6JS02	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-0052246_32	eggNOG-mapper	1519439.JPJG01000051_gene722	NA	NA
UHGV-0052246_32	Pfam	PF04404	ERF superfamily	ERF
UHGV-0052246_32	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0052246_33	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0052246_33	UniRef90	UniRef90_A0A174T6P1	Bacteriophage Mu Gam like protein	NA
UHGV-0052246_33	eggNOG-mapper	552398.HMPREF0866_01637	Bacteriophage Mu Gam like protein	NA
UHGV-0052246_33	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0052246_33	Structural annotation	COG4396	NA	NA
UHGV-0052246_34	eggNOG-mapper	1519439.JPJG01000051_gene724	NA	NA
UHGV-0052246_35	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052246_35	PHROG	phrog_18750	NA	unknown function
UHGV-0052246_35	UniRef90	UniRef90_A0A417HQN9	Cell wall hydrolase	NA
UHGV-0052246_35	eggNOG-mapper	552398.HMPREF0866_01639	Cell wall hydrolase	NA
UHGV-0052246_35	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0052246_35	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0052246_36	PHROG	phrog_14200	NA	unknown function
UHGV-0052246_36	UniRef90	UniRef90_R6Q8H8	Chitinase 3	NA
UHGV-0052246_36	eggNOG-mapper	1519439.JPJG01000051_gene726	NA	NA
UHGV-0052246_37	PHROG	phrog_17284	NA	unknown function
UHGV-0052246_37	UniRef90	UniRef90_R8VX88	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0052246_37	eggNOG-mapper	1203606.HMPREF1526_01874	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0052246_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0052246_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0052246_38	PHROG	phrog_17284	NA	unknown function
UHGV-0052246_38	eggNOG-mapper	1203606.HMPREF1526_01874	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0052246_38	COG	COG0270	DNA-cytosine methylase	NA