UHGV-0052333

Genome information

Genome length 13,723 bps

CDS count 16

Completeness 98.80% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052333
vOTU ID	vOTU-069500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55229
BioSample	SAMEA2147326
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.28
Jumbo phage	No

Genome content
Genome length	13,723 bps
GC content	37.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	93.42%
Average CDS length	804.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052333_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0052333_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0052333_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0052333_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0052333_3	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0052333_4	PHROG	phrog_11037	NA	unknown function
UHGV-0052333_4	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0052333_4	eggNOG-mapper	1449050.JNLE01000003_gene2104	Putative peptidoglycan binding domain	NA
UHGV-0052333_4	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0052333_4	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0052333_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0052333_4	Structural annotation	PF18013	NA	NA
UHGV-0052333_5	Structural annotation	PF20934	NA	NA
UHGV-0052333_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0052333_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0052333_8	Structural annotation	PF08239, COG4991	NA	NA
UHGV-0052333_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0052333_10	UniRef90	UniRef90_A0A2Z4GUD4	DNA encapsidation protein	NA
UHGV-0052333_10	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0052333_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0052333_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0052333_11	Structural annotation	PF17427	NA	NA
UHGV-0052333_12	Structural annotation	PF14902	NA	NA
UHGV-0052333_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0052333_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0052333_13	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0052333_13	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0052333_15	Structural annotation	PF07288, MF_01553, NF010188, COG5503	NA	NA