UHGV-0052365

Genome information

Genome length 37,658 bps

CDS count 62

Completeness 77.20% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052365
vOTU ID	vOTU-029564
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_60916
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.23
Jumbo phage	No

Genome content
Genome length	37,658 bps
GC content	53.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.43%
Average CDS length	565.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052365_1	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0052365_1	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0052365_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052365_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052365_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0052365_4	Structural annotation	PF03885	NA	NA
UHGV-0052365_9	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0052365_12	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052365_12	PHROG	phrog_30550	NA	unknown function
UHGV-0052365_12	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-0052365_12	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0052365_12	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0052365_16	PHROG	phrog_38338	NA	unknown function
UHGV-0052365_16	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0052365_17	PHROG	phrog_8470	NA	unknown function
UHGV-0052365_17	UniRef90	UniRef90_UPI00195A65BE	PcfJ domain-containing protein	NA
UHGV-0052365_17	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0052365_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0052365_18	PHROG	phrog_15609	NA	unknown function
UHGV-0052365_18	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-0052365_18	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-0052365_18	Pfam	PF11300	NA	DUF3102
UHGV-0052365_18	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0052365_18	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0052365_21	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0052365_23	PHROG	phrog_5781	NA	unknown function
UHGV-0052365_23	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0052365_23	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0052365_23	Pfam	PF14359	NA	DUF4406
UHGV-0052365_23	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0052365_23	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0052365_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052365_26	eggNOG-mapper	1235792.C808_00060	NA	NA
UHGV-0052365_26	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0052365_27	eggNOG-mapper	97139.C824_00025	NA	NA
UHGV-0052365_28	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0052365_28	UniRef90	UniRef90_E5VKE3	SLIT-ROBO Rho GTPase-activating protein 3	NA
UHGV-0052365_28	eggNOG-mapper	478749.BRYFOR_07532	NA	NA
UHGV-0052365_29	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0052365_29	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0052365_29	UniRef90	UniRef90_A0A810Q3U0	Terminase	NA
UHGV-0052365_29	eggNOG-mapper	97139.C824_03384	Phage terminase large subunit (GpA)	NA
UHGV-0052365_29	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0052365_29	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0052365_29	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0052365_29	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0052365_30	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0052365_30	UniRef90	UniRef90_A0A4D7AUI1	Peptidylprolyl isomerase	NA
UHGV-0052365_30	eggNOG-mapper	1235835.C814_01179	NA	NA
UHGV-0052365_30	Structural annotation	PF19645	NA	NA
UHGV-0052365_31	PHROG	phrog_21	portal protein	head and packaging
UHGV-0052365_31	UniRef90	UniRef90_A0A810Q9Q9	Phage portal protein	NA
UHGV-0052365_31	eggNOG-mapper	1211817.CCAT010000013_gene3186	Phage portal protein, lambda family	NA
UHGV-0052365_31	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0052365_31	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0052365_31	COG	COG5511	Phage capsid protein	NA
UHGV-0052365_31	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0052365_32	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0052365_32	UniRef90	UniRef90_A0A810QB92	Caudovirus prohead protease	NA
UHGV-0052365_32	eggNOG-mapper	1235835.C814_01181	Phage prohead protease, HK97 family	NA
UHGV-0052365_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0052365_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0052365_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0052365_33	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0052365_33	UniRef90	UniRef90_A0A4S2AAE7	Mu-like_gpT domain-containing protein	NA
UHGV-0052365_33	eggNOG-mapper	478749.BRYFOR_07537	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0052365_33	COG	COG3087	Cell division protein FtsN	NA
UHGV-0052365_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0052365_34	PHROG	phrog_122	head decoration	head and packaging
UHGV-0052365_34	UniRef90	UniRef90_A0A4D7ANQ2	NA	NA
UHGV-0052365_34	eggNOG-mapper	1415774.U728_501	NA	NA
UHGV-0052365_34	Pfam	PF09956	NA	DUF2190
UHGV-0052365_34	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0052365_34	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0052365_35	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0052365_35	eggNOG-mapper	887325.HMPREF0381_0388	NA	NA
UHGV-0052365_35	Structural annotation	PF12949	NA	NA
UHGV-0052365_36	PHROG	phrog_2551	minor tail protein	tail
UHGV-0052365_36	eggNOG-mapper	887325.HMPREF0381_0389	ATP-binding sugar transporter from pro-phage	NA
UHGV-0052365_36	Structural annotation	PF13856	NA	NA
UHGV-0052365_37	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0052365_37	UniRef90	UniRef90_UPI001B3C6273	phage tail protein	NA
UHGV-0052365_37	Structural annotation	PF06763	NA	NA
UHGV-0052365_38	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0052365_38	eggNOG-mapper	1444309.JAQG01000145_gene2689	NA	NA
UHGV-0052365_38	Structural annotation	PF08873	NA	NA
UHGV-0052365_39	PHROG	phrog_4089	NA	unknown function
UHGV-0052365_39	eggNOG-mapper	887325.HMPREF0381_0392	NA	NA
UHGV-0052365_40	KOfam	K06907	NA	NA
UHGV-0052365_40	PHROG	phrog_23	tail sheath	tail
UHGV-0052365_40	UniRef90	UniRef90_A0A845RD08	Phage tail sheath family protein	NA
UHGV-0052365_40	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-0052365_40	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0052365_40	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0052365_41	KOfam	K06908	NA	NA
UHGV-0052365_41	PHROG	phrog_55	head closure	connector
UHGV-0052365_41	UniRef90	UniRef90_A0A2V2GD83	Phage tail protein	NA
UHGV-0052365_41	eggNOG-mapper	887325.HMPREF0381_0394	Phage tail tube protein FII	NA
UHGV-0052365_41	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0052365_41	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0052365_41	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0052365_42	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0052365_42	UniRef90	UniRef90_A0A4D7AZF4	Phage tail assembly protein	NA
UHGV-0052365_42	eggNOG-mapper	1235835.C814_01190	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0052365_42	Structural annotation	PF10109	NA	NA
UHGV-0052365_43	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0052365_43	UniRef90	UniRef90_A0A0X1U7S0	Phage-related minor tail protein	NA
UHGV-0052365_43	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0052365_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0052365_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0052365_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0052365_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0052365_44	PHROG	phrog_46	tail protein	tail
UHGV-0052365_44	UniRef90	UniRef90_A0A2N2CRK7	Phage tail protein	NA
UHGV-0052365_44	eggNOG-mapper	97139.C824_03368	NA	NA
UHGV-0052365_44	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0052365_44	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0052365_45	KOfam	K06905	NA	NA
UHGV-0052365_45	PHROG	phrog_52	tail protein	tail
UHGV-0052365_45	UniRef90	UniRef90_G4KPI8	Late control D family protein	NA
UHGV-0052365_45	eggNOG-mapper	693746.OBV_22780	COG3500 Phage protein D	NA
UHGV-0052365_45	COG	COG3500	NA	NA
UHGV-0052365_45	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0052365_46	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0052365_46	UniRef90	UniRef90_UPI001D0EA0B7	phage baseplate protein	NA
UHGV-0052365_46	eggNOG-mapper	411470.RUMGNA_00243	Baseplate assembly protein	NA
UHGV-0052365_46	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0052365_46	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0052365_46	Structural annotation	PF05606, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0052365_47	KOfam	K06906	NA	NA
UHGV-0052365_47	PHROG	phrog_76	tail protein	tail
UHGV-0052365_47	UniRef90	UniRef90_UPI0004630165	phage tail protein	NA
UHGV-0052365_47	eggNOG-mapper	693746.OBV_22760	Phage P2 GpU	NA
UHGV-0052365_47	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0052365_47	COG	COG3499	NA	NA
UHGV-0052365_47	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0052365_48	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0052365_48	UniRef90	UniRef90_D1Y2B9	Putative lysozyme	NA
UHGV-0052365_48	eggNOG-mapper	352165.HMPREF7215_2807	GPW Gp25 family protein	NA
UHGV-0052365_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0052365_48	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0052365_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0052365_49	UniRef90	UniRef90_A0A810Q3S1	Baseplate_J domain-containing protein	NA
UHGV-0052365_49	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-0052365_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0052365_49	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0052365_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0052365_50	PHROG	phrog_14404	baseplate protein	tail
UHGV-0052365_50	UniRef90	UniRef90_A0A2V2GDM7	Phage tail protein I	NA
UHGV-0052365_50	eggNOG-mapper	1408437.JNJN01000030_gene1052	Phage tail protein (Tail_P2_I)	NA
UHGV-0052365_50	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0052365_50	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0052365_50	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0052365_51	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0052365_51	UniRef90	UniRef90_A0A8A5CUD5	Phage tail protein	NA
UHGV-0052365_51	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0052365_51	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0052365_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0052365_51	Structural annotation	PF12571	NA	NA
UHGV-0052365_52	PHROG	phrog_5302	tail protein	tail
UHGV-0052365_52	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0052365_52	eggNOG-mapper	1151292.QEW_0671	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0052365_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0052365_52	Structural annotation	PF14686, TIGR03000, COG1262	NA	NA
UHGV-0052365_54	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0052365_54	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0052365_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052365_56	PHROG	phrog_20388	endolysin	lysis
UHGV-0052365_56	UniRef90	UniRef90_A0A843HNI7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052365_56	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052365_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0052365_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052365_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0052365_57	PHROG	phrog_199	holin	lysis
UHGV-0052365_57	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0052365_57	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0052365_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0052365_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0052365_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0052365_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0052365_58	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0052365_58	PHROG	phrog_87	metallo-protease	other
UHGV-0052365_58	UniRef90	UniRef90_A0A2S5D8X5	Huntingtin interacting protein E-like protein	NA
UHGV-0052365_58	eggNOG-mapper	1392493.JIAB01000001_gene1573	NA	NA
UHGV-0052365_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0052365_58	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0052365_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0052365_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052365_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052365_59	UniRef90	UniRef90_A0A2S5D952	HTH cro/C1-type domain-containing protein	NA
UHGV-0052365_59	eggNOG-mapper	1392493.JIAB01000001_gene1572	sequence-specific DNA binding	NA
UHGV-0052365_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052365_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052365_60	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0052365_60	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0052365_60	UniRef90	UniRef90_R6ID61	HicB-like domain-containing protein	NA
UHGV-0052365_60	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0052365_60	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0052365_60	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0052365_60	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0052365_61	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0052365_61	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0052365_61	UniRef90	UniRef90_R6IZD1	Conserved domain protein	NA
UHGV-0052365_61	eggNOG-mapper	397290.C810_01568	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0052365_61	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0052365_61	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0052365_62	UniRef90	UniRef90_A0A3D6BJC0	BIG2 domain-containing protein	NA
UHGV-0052365_62	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2