UHGV-0052381

Genome information

Genome length 59,875 bps

CDS count 77

Completeness 64.61% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052381
vOTU ID	vOTU-036467
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32470
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.36
Jumbo phage	No

Genome content
Genome length	59,875 bps
GC content	37.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	90.07%
Average CDS length	702.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052381_1	KOfam	K21594	GUF1; translation factor GUF1, mitochondrial [EC:3.6.5.-]	NA
UHGV-0052381_1	PHROG	phrog_6880	translation elongation factor	other
UHGV-0052381_1	UniRef90	UniRef90_UPI00125D45B6	GTP-binding protein	NA
UHGV-0052381_1	eggNOG-mapper	1236514.BAKL01000073_gene4538	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	NA
UHGV-0052381_1	Pfam	PF00009	Elongation factor Tu GTP binding domain	GTP_EFTU
UHGV-0052381_1	NCBIFam	TIGR00231.1	GTP-binding protein	NA
UHGV-0052381_1	COG	COG0481	Translation elongation factor EF-4, membrane-bound GTPase	NA
UHGV-0052381_3	UniRef90	UniRef90_F3PLZ5	Conserved domain protein	NA
UHGV-0052381_3	eggNOG-mapper	762984.HMPREF9445_02890	NA	NA
UHGV-0052381_4	UniRef90	UniRef90_UPI001B39F7B4	GIY-YIG nuclease family protein	NA
UHGV-0052381_4	eggNOG-mapper	269798.CHU_0818	NA	NA
UHGV-0052381_5	PHROG	phrog_26448	NA	unknown function
UHGV-0052381_5	eggNOG-mapper	1268240.ATFI01000012_gene1443	NA	NA
UHGV-0052381_5	Pfam	PF20647	NA	DUF6808
UHGV-0052381_6	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0052381_6	PHROG	phrog_894	endolysin	lysis
UHGV-0052381_6	UniRef90	UniRef90_A0A412I9V0	Peptidase M15	NA
UHGV-0052381_6	eggNOG-mapper	1121101.HMPREF1532_02614	Peptidase M15	NA
UHGV-0052381_6	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0052381_6	COG	COG3108	NA	NA
UHGV-0052381_6	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0052381_8	PHROG	phrog_32423	NA	unknown function
UHGV-0052381_8	eggNOG-mapper	657309.BXY_05120	NA	NA
UHGV-0052381_9	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-0052381_9	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0052381_9	Structural annotation	PF06197, COG3371	NA	NA
UHGV-0052381_10	UniRef90	UniRef90_A0A6N2XL70	NA	NA
UHGV-0052381_10	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-0052381_10	Pfam	PF14301	NA	DUF4376
UHGV-0052381_10	Structural annotation	PF14301	NA	NA
UHGV-0052381_11	Pfam	PF15902	Sortilin, neurotensin receptor 3,	Sortilin-Vps10
UHGV-0052381_11	COG	COG1470	NA	NA
UHGV-0052381_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0052381_12	PHROG	phrog_36982	NA	unknown function
UHGV-0052381_12	UniRef90	UniRef90_A0A6N2XI25	Collagen triple helix repeat (20 copies)	NA
UHGV-0052381_12	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-0052381_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052381_12	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0052381_14	eggNOG-mapper	742727.HMPREF9447_01693	NA	NA
UHGV-0052381_15	PHROG	phrog_17422	NA	unknown function
UHGV-0052381_15	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0052381_15	COG	COG4926	Phage-related protein	NA
UHGV-0052381_15	Structural annotation	PF14594, PF04300, PF21634, TIGR01665, NF038128, COG4926	NA	NA
UHGV-0052381_16	PHROG	phrog_6305	tail protein	tail
UHGV-0052381_16	eggNOG-mapper	1347393.HG726021_gene470	NA	NA
UHGV-0052381_16	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0052381_17	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0052381_17	PHROG	phrog_14295	NA	unknown function
UHGV-0052381_17	UniRef90	UniRef90_A0A4Q5HRK7	Phage tail tape measure protein	NA
UHGV-0052381_17	eggNOG-mapper	357276.EL88_11230	NA	NA
UHGV-0052381_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0052381_19	PHROG	phrog_13416	NA	unknown function
UHGV-0052381_19	UniRef90	UniRef90_UPI001C705261	abortive infection system antitoxin AbiGi family protein	NA
UHGV-0052381_19	eggNOG-mapper	1137281.D778_00173	Putative abortive phage resistance protein AbiGi, antitoxin	NA
UHGV-0052381_19	PADLOC	AbiGi	AbiGi	Abi
UHGV-0052381_19	Pfam	PF10899	Putative abortive phage resistance protein AbiGi, antitoxin	AbiGi
UHGV-0052381_19	Structural annotation	PF10899	NA	NA
UHGV-0052381_20	eggNOG-mapper	387631.Asulf_01505	NA	NA
UHGV-0052381_21	UniRef90	UniRef90_A0A7Y3Y2P6	Trypco2 domain-containing protein	NA
UHGV-0052381_21	eggNOG-mapper	1392486.JIAF01000004_gene846	NA	NA
UHGV-0052381_28	UniRef90	UniRef90_UPI00046FA8B4	P-loop NTPase fold protein	NA
UHGV-0052381_28	eggNOG-mapper	985255.APHJ01000047_gene400	KAP family P-loop domain	NA
UHGV-0052381_28	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0052381_28	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0052381_28	Structural annotation	PF07693, NF041923, COG4928	NA	NA
UHGV-0052381_30	PHROG	phrog_10226	NA	unknown function
UHGV-0052381_30	eggNOG-mapper	1347369.CCAD010000077_gene2877	Restriction endonuclease	NA
UHGV-0052381_30	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0052381_30	Structural annotation	PF01878, COG4127	NA	NA
UHGV-0052381_31	PHROG	phrog_13669	NA	unknown function
UHGV-0052381_31	eggNOG-mapper	1268240.ATFI01000021_gene161	NA	NA
UHGV-0052381_31	Structural annotation	PF20336	NA	NA
UHGV-0052381_32	PHROG	phrog_14600	NA	unknown function
UHGV-0052381_32	eggNOG-mapper	1268240.ATFI01000021_gene160	NA	NA
UHGV-0052381_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0052381_33	PHROG	phrog_5597	NA	unknown function
UHGV-0052381_33	eggNOG-mapper	357276.EL88_11275	NA	NA
UHGV-0052381_33	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-0052381_34	PHROG	phrog_5377	NA	unknown function
UHGV-0052381_34	eggNOG-mapper	585543.HMPREF0969_03357	NA	NA
UHGV-0052381_34	Structural annotation	PF04883	NA	NA
UHGV-0052381_35	PHROG	phrog_16482	NA	unknown function
UHGV-0052381_35	eggNOG-mapper	1268240.ATFI01000021_gene157	NA	NA
UHGV-0052381_35	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0052381_36	PHROG	phrog_7935	NA	unknown function
UHGV-0052381_36	eggNOG-mapper	435591.BDI_0886	NA	NA
UHGV-0052381_36	Pfam	PF20449	NA	DUF6706
UHGV-0052381_36	Structural annotation	PF20449	NA	NA
UHGV-0052381_37	PHROG	phrog_16445	NA	unknown function
UHGV-0052381_37	eggNOG-mapper	1268240.ATFI01000008_gene2588	NA	NA
UHGV-0052381_38	PHROG	phrog_29	major head protein	head and packaging
UHGV-0052381_38	UniRef90	UniRef90_A0A8D9UHX5	Major capsid protein E	NA
UHGV-0052381_38	eggNOG-mapper	1268240.ATFI01000008_gene2587	Phage major capsid protein E	NA
UHGV-0052381_38	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0052381_38	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0052381_39	PHROG	phrog_38330	NA	unknown function
UHGV-0052381_39	eggNOG-mapper	1268240.ATFI01000008_gene2586	NA	NA
UHGV-0052381_39	Structural annotation	PF02924	NA	NA
UHGV-0052381_40	PHROG	phrog_5824	NA	unknown function
UHGV-0052381_40	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-0052381_41	UniRef90	UniRef90_A0A5C6JEW1	SIR2_2 domain-containing protein	NA
UHGV-0052381_41	eggNOG-mapper	641524.ADICYQ_1946	NAD+ binding	NA
UHGV-0052381_41	PADLOC	Aga_SIR2	NA	Argonaute
UHGV-0052381_41	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0052381_41	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0052381_42	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0052381_42	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0052381_42	UniRef90	UniRef90_K5Z7F6	HTH cro/C1-type domain-containing protein	NA
UHGV-0052381_42	eggNOG-mapper	1235788.C802_03521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052381_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052381_42	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-0052381_42	Structural annotation	PF01381, MF_00535, NF041951, COG5499	NA	NA
UHGV-0052381_43	KOfam	K19166	higB; mRNA interferase HigB [EC:3.1.-.-]	NA
UHGV-0052381_43	PHROG	phrog_5734	NA	unknown function
UHGV-0052381_43	UniRef90	UniRef90_A0A174NF87	Type II toxin-antitoxin system HigB family toxin	NA
UHGV-0052381_43	eggNOG-mapper	1235788.C802_03522	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA
UHGV-0052381_43	Pfam	PF09907	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	HigB_toxin
UHGV-0052381_43	COG	COG4680	mRNA-degrading endonuclease (mRNA interferase) HigB, toxic component of the HigAB toxin-antitoxin module	NA
UHGV-0052381_43	Structural annotation	PF09907, TIGR00053, COG4680	NA	NA
UHGV-0052381_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0052381_44	UniRef90	UniRef90_A0A0N7IEQ8	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0052381_44	eggNOG-mapper	1268240.ATFI01000008_gene2582	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0052381_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0052381_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0052381_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052381_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0052381_45	UniRef90	UniRef90_UPI00046EC9E1	PBSX family phage terminase large subunit	NA
UHGV-0052381_45	eggNOG-mapper	435591.BDI_0879	Terminase RNAseH like domain	NA
UHGV-0052381_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0052381_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0052381_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0052381_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052381_45	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0052381_46	UniRef90	UniRef90_UPI0008D90FF6	helix-turn-helix domain containing protein	NA
UHGV-0052381_46	eggNOG-mapper	411477.PARMER_02048	NA	NA
UHGV-0052381_47	PHROG	phrog_9353	NA	unknown function
UHGV-0052381_47	UniRef90	UniRef90_A0A0X8JA44	ParB domain-containing protein	NA
UHGV-0052381_47	eggNOG-mapper	411477.PARMER_02049	NA	NA
UHGV-0052381_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052381_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0052381_47	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0052381_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0052381_48	UniRef90	UniRef90_A0A7W2IHL4	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0052381_48	eggNOG-mapper	357276.EL88_11355	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0052381_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0052381_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0052381_48	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-0052381_50	eggNOG-mapper	411477.PARMER_02052	NA	NA
UHGV-0052381_50	Structural annotation	PF04322, MF_00684, NF003443, COG4043	NA	NA
UHGV-0052381_51	UniRef90	UniRef90_A0A412I9Y5	NA	NA
UHGV-0052381_51	eggNOG-mapper	1268240.ATFI01000008_gene2575	NA	NA
UHGV-0052381_51	Pfam	PF12989	NA	DUF3873
UHGV-0052381_51	Structural annotation	PF12989, NF041597	NA	NA
UHGV-0052381_52	PHROG	phrog_28609	NA	unknown function
UHGV-0052381_52	eggNOG-mapper	357276.EL88_11370	NA	NA
UHGV-0052381_53	eggNOG-mapper	585543.HMPREF0969_03375	NA	NA
UHGV-0052381_54	eggNOG-mapper	357276.EL88_11380	NA	NA
UHGV-0052381_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052381_57	UniRef90	UniRef90_UPI001E437C3D	helix-turn-helix transcriptional regulator	NA
UHGV-0052381_57	eggNOG-mapper	411476.BACOVA_02995	NA	NA
UHGV-0052381_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052381_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052381_57	Structural annotation	PF01381, TIGR02684, COG1396	NA	NA
UHGV-0052381_59	PHROG	phrog_38368	NA	unknown function
UHGV-0052381_59	eggNOG-mapper	357276.EL88_11410	NA	NA
UHGV-0052381_59	Structural annotation	NF004687	NA	NA
UHGV-0052381_61	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0052381_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0052381_61	UniRef90	UniRef90_A0A412XUT6	Recombinase	NA
UHGV-0052381_61	eggNOG-mapper	1122971.BAME01000175_gene6695	Phage integrase SAM-like domain	NA
UHGV-0052381_61	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0052381_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052381_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052381_61	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0052381_63	KOfam	K14059	int; integrase	NA
UHGV-0052381_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0052381_63	UniRef90	UniRef90_UPI0003654C7D	site-specific integrase	NA
UHGV-0052381_63	eggNOG-mapper	411476.BACOVA_03915	Belongs to the 'phage' integrase family	NA
UHGV-0052381_63	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0052381_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052381_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052381_63	Structural annotation	PF00589, PF13102, MF_02055, NF040815, COG4974	NA	NA
UHGV-0052381_64	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0052381_64	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0052381_64	UniRef90	UniRef90_UPI001BA4768D	N-6 DNA methylase	NA
UHGV-0052381_64	eggNOG-mapper	411476.BACOVA_03912	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0052381_64	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0052381_64	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0052381_64	Structural annotation	TIGR02469, COG0827	NA	NA
UHGV-0052381_68	PHROG	phrog_4433	NA	unknown function
UHGV-0052381_68	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0052381_68	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0052381_69	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0052381_69	eggNOG-mapper	411901.BACCAC_01185	NA	NA
UHGV-0052381_70	PHROG	phrog_28300	NA	unknown function
UHGV-0052381_70	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0052381_71	PHROG	phrog_19578	NA	unknown function
UHGV-0052381_71	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-0052381_71	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-0052381_72	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0052381_72	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0052381_72	UniRef90	UniRef90_A0A6N2XK80	DNA helicase	NA
UHGV-0052381_72	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0052381_72	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0052381_72	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0052381_72	COG	COG0305	Replicative DNA helicase	NA
UHGV-0052381_72	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0052381_73	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052381_73	UniRef90	UniRef90_A0A174JNZ9	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	NA
UHGV-0052381_73	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0052381_73	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0052381_73	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0052381_73	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0052381_75	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0052381_75	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052381_75	UniRef90	UniRef90_A0A016I409	Endodeoxyribonuclease RusA family protein	NA
UHGV-0052381_75	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0052381_75	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0052381_75	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0052381_77	PHROG	phrog_35807	NA	unknown function
UHGV-0052381_77	UniRef90	UniRef90_A0A173Z9Q2	DNA-directed RNA polymerase subunit beta	NA
UHGV-0052381_77	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-0052381_77	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0052381_77	Structural annotation	PF14902	NA	NA