UHGV-0052423

Genome information

Genome length 37,021 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052423
vOTU ID	vOTU-007403
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_34802
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.15
Jumbo phage	No

Genome content
Genome length	37,021 bps
GC content	43.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.58%
Average CDS length	617.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052423_1	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0052423_2	PHROG	phrog_8470	NA	unknown function
UHGV-0052423_2	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0052423_2	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0052423_2	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0052423_2	Structural annotation	PF14284	NA	NA
UHGV-0052423_3	PHROG	phrog_15077	NA	unknown function
UHGV-0052423_3	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0052423_3	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0052423_3	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0052423_5	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0052423_6	PHROG	phrog_7566	NA	unknown function
UHGV-0052423_6	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0052423_9	PHROG	phrog_8684	NA	unknown function
UHGV-0052423_9	UniRef90	UniRef90_UPI000CF845A0	YopX family protein	NA
UHGV-0052423_9	eggNOG-mapper	1235800.C819_02639	YopX protein	NA
UHGV-0052423_9	Pfam	PF09643	YopX protein	YopX
UHGV-0052423_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0052423_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0052423_10	UniRef90	UniRef90_A0A373MPD0	XRE family transcriptional regulator	NA
UHGV-0052423_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0052423_13	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0052423_13	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0052423_13	Pfam	PF07374	NA	DUF1492
UHGV-0052423_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0052423_13	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0052423_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0052423_14	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052423_14	UniRef90	UniRef90_A0A373MPW5	HNH endonuclease	NA
UHGV-0052423_14	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0052423_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0052423_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052423_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0052423_15	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0052423_15	eggNOG-mapper	926561.KB900623_gene765	NA	NA
UHGV-0052423_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0052423_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0052423_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0052423_16	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0052423_16	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0052423_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0052423_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0052423_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0052423_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0052423_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0052423_17	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0052423_17	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0052423_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0052423_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0052423_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0052423_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0052423_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0052423_18	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0052423_18	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0052423_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0052423_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0052423_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0052423_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0052423_19	UniRef90	UniRef90_A0A844KDK0	Phage major capsid protein	NA
UHGV-0052423_19	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0052423_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0052423_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0052423_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0052423_19	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0052423_21	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0052423_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0052423_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0052423_22	Structural annotation	PF05657	NA	NA
UHGV-0052423_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0052423_23	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0052423_23	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0052423_24	PHROG	phrog_88	major tail protein	tail
UHGV-0052423_24	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0052423_24	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0052423_24	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0052423_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0052423_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0052423_27	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0052423_27	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0052423_27	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0052423_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0052423_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0052423_27	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0052423_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0052423_28	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0052423_28	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0052423_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0052423_28	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0052423_29	PHROG	phrog_13289	tail protein	tail
UHGV-0052423_29	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-0052423_29	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0052423_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0052423_29	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0052423_29	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0052423_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0052423_30	PHROG	phrog_14030	NA	unknown function
UHGV-0052423_30	UniRef90	UniRef90_A0A844KDJ1	Peptidase M23	NA
UHGV-0052423_30	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0052423_30	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0052423_30	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0052423_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0052423_30	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0052423_31	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0052423_31	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0052423_31	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0052423_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052423_31	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0052423_32	PHROG	phrog_16164	NA	unknown function
UHGV-0052423_32	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0052423_32	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0052423_33	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0052423_33	PHROG	phrog_819	tail protein	tail
UHGV-0052423_33	UniRef90	UniRef90_UPI0006C6DE05	collagen-like protein	NA
UHGV-0052423_33	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0052423_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052423_34	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0052423_34	PHROG	phrog_819	tail protein	tail
UHGV-0052423_34	UniRef90	UniRef90_UPI0006C3C855	collagen-like protein	NA
UHGV-0052423_34	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-0052423_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052423_35	Structural annotation	PF17900	NA	NA
UHGV-0052423_36	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0052423_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0052423_36	UniRef90	UniRef90_A0A844KCF3	Tyrosine-type recombinase/integrase	NA
UHGV-0052423_36	eggNOG-mapper	742765.HMPREF9457_03372	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0052423_36	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0052423_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052423_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0052423_36	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0052423_38	UniRef90	UniRef90_A0A373CM53	Acyl carrier protein	NA
UHGV-0052423_38	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0052423_38	Structural annotation	PF14301	NA	NA
UHGV-0052423_39	PHROG	phrog_20274	NA	unknown function
UHGV-0052423_39	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0052423_39	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0052423_39	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0052423_39	COG	COG4905	NA	NA
UHGV-0052423_39	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0052423_40	PHROG	phrog_1863	NA	unknown function
UHGV-0052423_40	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0052423_41	PHROG	phrog_18218	NA	unknown function
UHGV-0052423_41	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0052423_41	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0052423_41	Structural annotation	PF06946	NA	NA
UHGV-0052423_42	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0052423_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0052423_43	PHROG	phrog_291	endolysin	lysis
UHGV-0052423_43	UniRef90	UniRef90_A0A564SYY2	Glycosyl hydrolases family 25	NA
UHGV-0052423_43	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0052423_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0052423_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0052423_43	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0052423_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0052423_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0052423_44	UniRef90	UniRef90_A0A374E9M4	Recombinase family protein	NA
UHGV-0052423_44	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0052423_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0052423_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0052423_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0052423_44	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0052423_45	PHROG	phrog_10934	NA	unknown function
UHGV-0052423_45	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0052423_46	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0052423_46	PHROG	phrog_7872	NA	unknown function
UHGV-0052423_46	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0052423_46	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0052423_46	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0052423_46	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0052423_46	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0052423_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0052423_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0052423_48	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0052423_48	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052423_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052423_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052423_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0052423_54	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052423_54	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0052423_54	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0052423_55	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0052423_55	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0052423_55	UniRef90	UniRef90_A0A373MPV2	Ribonuclease HI	NA
UHGV-0052423_55	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0052423_55	Pfam	PF00075	RNase H	RNase_H
UHGV-0052423_55	COG	COG0328	Ribonuclease HI	NA
UHGV-0052423_55	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0052423_56	UniRef90	UniRef90_UPI0019162139	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0052423_56	eggNOG-mapper	1235792.C808_00065	NA	NA