UHGV-0052481

Genome information

Genome length 29,775 bps

CDS count 51

Completeness 51.68% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052481
vOTU ID	vOTU-039993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_56339
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.61
Jumbo phage	No

Genome content
Genome length	29,775 bps
GC content	48.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	82.06%
Average CDS length	481.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052481_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0052481_1	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0052481_1	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0052481_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0052481_3	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052481_3	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0052481_3	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0052481_3	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0052481_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0052481_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0052481_5	UniRef90	UniRef90_UPI001D06C27F	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0052481_5	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0052481_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0052481_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0052481_5	Structural annotation	PF01507	NA	NA
UHGV-0052481_7	Pfam	PF04448	NA	DUF551
UHGV-0052481_7	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0052481_8	Structural annotation	PF16677	NA	NA
UHGV-0052481_10	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0052481_11	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0052481_11	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0052481_11	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0052481_11	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0052481_12	PHROG	phrog_14697	NA	unknown function
UHGV-0052481_12	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-0052481_12	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0052481_17	Structural annotation	NF041588	NA	NA
UHGV-0052481_18	Pfam	PF04448	NA	DUF551
UHGV-0052481_18	Structural annotation	NF041588	NA	NA
UHGV-0052481_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0052481_21	UniRef90	UniRef90_S0JRD7	Lar family restriction alleviation protein	NA
UHGV-0052481_21	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0052481_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0052481_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0052481_21	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0052481_22	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0052481_22	Pfam	PF19808	NA	DUF6291
UHGV-0052481_22	Structural annotation	PF19808	NA	NA
UHGV-0052481_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0052481_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0052481_23	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0052481_23	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0052481_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0052481_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0052481_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0052481_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052481_32	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0052481_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0052481_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0052481_33	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0052481_33	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0052481_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0052481_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0052481_33	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0052481_34	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0052481_36	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0052481_37	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0052481_37	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0052481_37	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0052481_37	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0052481_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0052481_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0052481_37	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0052481_38	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0052481_38	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0052481_38	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0052481_38	COG	COG5410	NA	NA
UHGV-0052481_38	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0052481_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0052481_40	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0052481_40	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0052481_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0052481_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0052481_43	PHROG	phrog_29	major head protein	head and packaging
UHGV-0052481_43	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0052481_43	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0052481_43	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0052481_43	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0052481_44	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0052481_44	Structural annotation	TIGR01560	NA	NA
UHGV-0052481_45	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0052481_47	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0052481_48	PHROG	phrog_158	major tail protein	tail
UHGV-0052481_48	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0052481_48	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0052481_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0052481_49	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0052481_49	Pfam	PF16478	NA	DUF5055
UHGV-0052481_49	Structural annotation	PF16478	NA	NA
UHGV-0052481_50	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0052481_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0052481_51	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-0052481_51	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0052481_51	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA