UHGV-0052483

Genome information

Genome length 18,648 bps

CDS count 25

Completeness 93.71% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052483
vOTU ID	vOTU-061167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_56525
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	18,648 bps
GC content	43.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	88.35%
Average CDS length	660.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052483_1	Structural annotation	PF17548	NA	NA
UHGV-0052483_2	Structural annotation	PF17427	NA	NA
UHGV-0052483_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0052483_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0052483_4	UniRef90	UniRef90_A0A077ZQ14	DNA-directed DNA polymerase	NA
UHGV-0052483_4	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0052483_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0052483_4	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0052483_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0052483_9	UniRef90	UniRef90_A0A843HRH6	Phage DNA encapsidation protein	NA
UHGV-0052483_9	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0052483_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0052483_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0052483_10	PHROG	phrog_199	holin	lysis
UHGV-0052483_10	UniRef90	UniRef90_A0A7K3XW11	Holin	NA
UHGV-0052483_10	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0052483_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0052483_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0052483_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0052483_11	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0052483_11	PHROG	phrog_894	endolysin	lysis
UHGV-0052483_11	UniRef90	UniRef90_A0A1Y3TQ65	Peptidase_M15_3 domain-containing protein	NA
UHGV-0052483_11	eggNOG-mapper	748224.HMPREF9436_01185	Peptidase M15A	NA
UHGV-0052483_11	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0052483_11	COG	COG3108	NA	NA
UHGV-0052483_11	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0052483_12	Structural annotation	PF11418	NA	NA
UHGV-0052483_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0052483_13	UniRef90	UniRef90_A0A843GX77	Ig-like domain-containing protein	NA
UHGV-0052483_13	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0052483_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0052483_14	PHROG	phrog_2248	tail protein	tail
UHGV-0052483_14	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0052483_14	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0052483_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0052483_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0052483_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0052483_15	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0052483_15	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0052483_15	eggNOG-mapper	702450.CUW_2377	Peptidase, M23 family	NA
UHGV-0052483_15	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0052483_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0052483_15	Structural annotation	PF01551, NF041208, COG0739	NA	NA
UHGV-0052483_16	PHROG	phrog_2038	upper collar connector	connector
UHGV-0052483_16	UniRef90	UniRef90_Q9FZW5	Head-tail connector (Portal protein)	NA
UHGV-0052483_16	eggNOG-mapper	10747.Q37995_BPCP1	Phage Connector (GP10)	NA
UHGV-0052483_16	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0052483_16	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0052483_17	PHROG	phrog_5472	lower collar	tail
UHGV-0052483_18	Structural annotation	PF17900	NA	NA
UHGV-0052483_20	PHROG	phrog_2234	tail spike protein	tail
UHGV-0052483_20	eggNOG-mapper	1123072.AUDH01000038_gene146	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-0052483_20	COG	COG5434	Polygalacturonase	NA
UHGV-0052483_23	Structural annotation	PF14120	NA	NA