UHGV-0052505

Genome information

vOTU vOTU-020694

Genome length 43,560 bps

CDS count 74

Completeness 64.87% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052505
vOTU ID	vOTU-020694
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_56039
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.52
Jumbo phage	No

Genome content
Genome length	43,560 bps
GC content	45.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	88.50%
Average CDS length	524.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052505_1	PHROG	phrog_6465	tail protein	tail
UHGV-0052505_1	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0052505_1	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0052505_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0052505_2	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0052505_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0052505_3	PHROG	phrog_24267	NA	unknown function
UHGV-0052505_3	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0052505_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0052505_4	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0052505_4	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0052505_4	Structural annotation	PF05660, NF012201	NA	NA
UHGV-0052505_5	PHROG	phrog_5417	NA	unknown function
UHGV-0052505_5	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0052505_5	eggNOG-mapper	1459636.NTE_01434	NA	NA
UHGV-0052505_5	Structural annotation	PF12571	NA	NA
UHGV-0052505_6	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0052505_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0052505_6	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0052505_7	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0052505_7	Structural annotation	PF20387	NA	NA
UHGV-0052505_8	Structural annotation	PF20387	NA	NA
UHGV-0052505_10	PHROG	phrog_2081	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052505_10	UniRef90	UniRef90_A0A143FKG0	HNH endonuclease	NA
UHGV-0052505_10	eggNOG-mapper	1115512.EH105704_05_00190	NA	NA
UHGV-0052505_11	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0052505_11	UniRef90	UniRef90_UPI0004838F8E	NA	NA
UHGV-0052505_11	eggNOG-mapper	1485543.JMME01000020_gene788	NA	NA
UHGV-0052505_11	Pfam	PF17236	NA	DUF5309
UHGV-0052505_11	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0052505_12	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0052505_14	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0052505_14	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0052505_14	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-0052505_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0052505_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0052505_15	Structural annotation	PF21621, MF_01255, NF009806, COG4766	NA	NA
UHGV-0052505_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052505_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0052505_16	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0052505_16	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0052505_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0052505_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052505_16	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0052505_17	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0052505_17	UniRef90	UniRef90_A0A1H0T4P8	DNA-packaging protein gp3	NA
UHGV-0052505_17	eggNOG-mapper	485915.Dret_1613	DNA-packaging protein gp3	NA
UHGV-0052505_17	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0052505_19	PHROG	phrog_16683	NA	unknown function
UHGV-0052505_19	UniRef90	UniRef90_UPI000C7E58C8	amidoligase family protein	NA
UHGV-0052505_19	eggNOG-mapper	1384066.JAGT01000001_gene2548	NA	NA
UHGV-0052505_19	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0052505_19	Structural annotation	PF12224, PF15591, MF_01609, NF010044, COG2170, COG2139	NA	NA
UHGV-0052505_20	UniRef90	UniRef90_A0A523RS96	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0052505_20	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0052505_23	UniRef90	UniRef90_D9PHN6	Plasmid related protein	NA
UHGV-0052505_23	eggNOG-mapper	1198114.AciX9_1951	NA	NA
UHGV-0052505_26	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0052505_26	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0052505_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052505_27	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0052505_27	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0052505_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0052505_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0052505_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052505_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052505_28	UniRef90	UniRef90_A0A402BTH0	Single-stranded DNA-binding protein	NA
UHGV-0052505_28	eggNOG-mapper	585503.HMPREF7545_1163	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0052505_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052505_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052505_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052505_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052505_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0052505_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0052505_29	UniRef90	UniRef90_UPI0019051A6A	NA	NA
UHGV-0052505_29	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0052505_29	Pfam	PF11753	NA	DUF3310
UHGV-0052505_30	KOfam	K07584	NA	NA
UHGV-0052505_30	UniRef90	UniRef90_A0A316S0R5	Ribosomal-processing cysteine protease Prp	NA
UHGV-0052505_30	eggNOG-mapper	1262915.BN574_00870	Cysteine protease Prp	NA
UHGV-0052505_30	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0052505_30	COG	COG2868	NA	NA
UHGV-0052505_31	UniRef90	UniRef90_A0A1Q6R577	NA	NA
UHGV-0052505_31	Structural annotation	PF18892	NA	NA
UHGV-0052505_32	eggNOG-mapper	585394.RHOM_13935	SPFH Band 7 PHB domain protein	NA
UHGV-0052505_32	COG	COG2268	NA	NA
UHGV-0052505_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0052505_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052505_33	UniRef90	UniRef90_A5ZPW8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0052505_33	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0052505_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0052505_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0052505_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0052505_34	eggNOG-mapper	123214.PERMA_1060	negative regulation of transcription, DNA-templated	NA
UHGV-0052505_34	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0052505_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0052505_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0052505_36	UniRef90	UniRef90_UPI001D0AD933	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0052505_36	eggNOG-mapper	1262915.BN574_00217	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0052505_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0052505_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0052505_36	Structural annotation	PF00692, PF18697, MF_00116, MF_00369, NF010561, COG0756, COG2139	NA	NA
UHGV-0052505_42	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0052505_43	PHROG	phrog_1997	NA	unknown function
UHGV-0052505_51	PHROG	phrog_9804	NA	unknown function
UHGV-0052505_51	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0052505_52	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0052505_52	eggNOG-mapper	1196322.A370_04074	DnaD domain protein	NA
UHGV-0052505_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0052505_52	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-0052505_55	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0052505_55	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052505_55	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0052505_55	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0052505_55	Pfam	PF03837	RecT family	RecT
UHGV-0052505_55	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0052505_55	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0052505_55	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0052505_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052505_56	UniRef90	UniRef90_UPI001CD20A9A	YqaJ viral recombinase family protein	NA
UHGV-0052505_56	eggNOG-mapper	1111454.HMPREF1250_0282	YqaJ viral recombinase family protein	NA
UHGV-0052505_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0052505_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0052505_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0052505_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0052505_59	eggNOG-mapper	1262915.BN574_00130	Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and or DivIC to the division machinery	NA
UHGV-0052505_59	COG	COG1388	LysM repeat	NA
UHGV-0052505_59	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0052505_60	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0052505_60	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0052505_60	UniRef90	UniRef90_A0A2B2CAX6	HTH cro/C1-type domain-containing protein	NA
UHGV-0052505_60	eggNOG-mapper	103690.17132056	Helix-turn-helix domain	NA
UHGV-0052505_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052505_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052505_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052505_60	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0052505_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052505_62	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0052505_63	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0052505_64	PHROG	phrog_16490	NA	unknown function
UHGV-0052505_64	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0052505_65	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0052505_65	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0052505_65	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0052505_65	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0052505_68	PHROG	phrog_918	NA	unknown function
UHGV-0052505_68	UniRef90	UniRef90_UPI0008DFA801	NA	NA
UHGV-0052505_68	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0052505_68	Pfam	PF19791	NA	DUF6275
UHGV-0052505_68	Structural annotation	PF19791	NA	NA
UHGV-0052505_69	PHROG	phrog_774	NA	unknown function
UHGV-0052505_69	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0052505_70	PHROG	phrog_5867	endolysin	lysis
UHGV-0052505_70	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052505_70	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052505_70	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0052505_70	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0052505_70	Structural annotation	MF_04111	NA	NA
UHGV-0052505_71	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0052505_73	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0052505_73	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0052505_73	COG	COG4926	Phage-related protein	NA
UHGV-0052505_74	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0052505_74	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA