UHGV-0052674

Genome information

Genome length 30,719 bps

CDS count 49

Completeness 71.95% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052674
vOTU ID	vOTU-035545
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52654
BioSample	SAMEA2142349
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.74
Jumbo phage	No

Genome content
Genome length	30,719 bps
GC content	52.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.91%
Average CDS length	573.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052674_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0052674_2	PHROG	phrog_28802	NA	unknown function
UHGV-0052674_2	Structural annotation	PF12510	NA	NA
UHGV-0052674_3	PHROG	phrog_20016	NA	unknown function
UHGV-0052674_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0052674_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0052674_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0052674_4	PHROG	phrog_16490	NA	unknown function
UHGV-0052674_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0052674_5	PHROG	phrog_22984	NA	unknown function
UHGV-0052674_6	PHROG	phrog_21718	NA	unknown function
UHGV-0052674_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0052674_7	PHROG	phrog_3754	NA	unknown function
UHGV-0052674_7	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0052674_9	PHROG	phrog_9589	endolysin	lysis
UHGV-0052674_9	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0052674_9	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0052674_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0052674_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0052674_9	Structural annotation	PF01520, PF01471, TIGR02883, COG0860	NA	NA
UHGV-0052674_10	PHROG	phrog_1129	holin	lysis
UHGV-0052674_10	UniRef90	UniRef90_A0A1Q6RI18	Enolase	NA
UHGV-0052674_10	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0052674_10	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0052674_10	Structural annotation	PF06946	NA	NA
UHGV-0052674_11	PHROG	phrog_4105	NA	unknown function
UHGV-0052674_11	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0052674_11	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0052674_13	PHROG	phrog_2310	NA	unknown function
UHGV-0052674_13	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0052674_16	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0052674_16	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0052674_16	UniRef90	UniRef90_H1CEN0	Reverse transcriptase domain-containing protein	NA
UHGV-0052674_16	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0052674_16	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0052674_16	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0052674_16	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0052674_16	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0052674_17	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0052674_18	PHROG	phrog_37900	NA	unknown function
UHGV-0052674_18	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0052674_18	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0052674_18	Pfam	PF19789	NA	DUF6273
UHGV-0052674_18	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0052674_18	Structural annotation	PF19789	NA	NA
UHGV-0052674_20	Structural annotation	PF16472, MF_01195, TIGR03547, COG3055	NA	NA
UHGV-0052674_22	PHROG	phrog_18725	NA	unknown function
UHGV-0052674_22	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0052674_22	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0052674_22	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0052674_23	PHROG	phrog_13879	NA	unknown function
UHGV-0052674_23	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0052674_23	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0052674_24	PHROG	phrog_1194	NA	unknown function
UHGV-0052674_24	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0052674_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0052674_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0052674_25	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0052674_25	COG	COG1511	NA	NA
UHGV-0052674_25	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0052674_26	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0052674_26	PHROG	phrog_19856	NA	unknown function
UHGV-0052674_26	UniRef90	UniRef90_UPI00147CC032	restriction endonuclease	NA
UHGV-0052674_26	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0052674_26	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0052674_26	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0052674_26	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0052674_26	Structural annotation	PF04471, MF_00584, NF040854, COG1787	NA	NA
UHGV-0052674_27	PHROG	phrog_706	NA	unknown function
UHGV-0052674_27	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0052674_27	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0052674_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0052674_27	Structural annotation	PF06854	NA	NA
UHGV-0052674_28	PHROG	phrog_11299	NA	unknown function
UHGV-0052674_28	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0052674_28	Structural annotation	PF10666	NA	NA
UHGV-0052674_29	PHROG	phrog_3099	NA	unknown function
UHGV-0052674_29	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0052674_29	Structural annotation	TIGR02126	NA	NA
UHGV-0052674_30	PHROG	phrog_3266	tail completion	connector
UHGV-0052674_30	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0052674_30	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0052674_30	Structural annotation	PF12691	NA	NA
UHGV-0052674_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0052674_31	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0052674_31	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0052674_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0052674_31	Structural annotation	PF11114	NA	NA
UHGV-0052674_32	PHROG	phrog_3366	NA	unknown function
UHGV-0052674_32	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0052674_32	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0052674_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0052674_33	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0052674_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0052674_34	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0052674_34	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0052674_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0052674_35	Structural annotation	PF06810	NA	NA
UHGV-0052674_36	Structural annotation	PF18152	NA	NA
UHGV-0052674_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0052674_37	UniRef90	UniRef90_A0A2Z4QAD7	Minor capsid protein 2	NA
UHGV-0052674_37	eggNOG-mapper	1232443.BAIA02000078_gene34	cell adhesion	NA
UHGV-0052674_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0052674_37	COG	COG2369	NA	NA
UHGV-0052674_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052674_38	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-0052674_38	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0052674_38	Structural annotation	PF17375	NA	NA
UHGV-0052674_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0052674_39	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0052674_39	eggNOG-mapper	1232443.BAIA02000078_gene35	NA	NA
UHGV-0052674_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0052674_39	COG	COG2369	NA	NA
UHGV-0052674_39	Structural annotation	PF06152	NA	NA
UHGV-0052674_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0052674_41	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0052674_41	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0052674_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0052674_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0052674_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052674_42	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0052674_42	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0052674_42	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0052674_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0052674_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0052674_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052674_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0052674_43	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052674_43	UniRef90	UniRef90_A0A7M1RYD3	Endonuclease	NA
UHGV-0052674_43	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0052674_43	Structural annotation	PF04936, TIGR01453	NA	NA
UHGV-0052674_44	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0052674_44	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0052674_44	Structural annotation	PF13542	NA	NA
UHGV-0052674_45	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0052674_46	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0052674_49	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA