UHGV-0052696

Genome information

Genome length 37,877 bps

CDS count 52

Completeness 78.56% (medium-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052696
vOTU ID	vOTU-016751
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_65967
BioSample	SAMEA2338731
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.92
Jumbo phage	No

Genome content
Genome length	37,877 bps
GC content	49.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.51%
Average CDS length	700.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052696_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0052696_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0052696_1	UniRef90	UniRef90_B0K4R6	Recombinase	NA
UHGV-0052696_1	eggNOG-mapper	1304880.JAGB01000002_gene2253	NA	NA
UHGV-0052696_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0052696_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0052696_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0052696_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0052696_3	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0052696_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052696_3	UniRef90	UniRef90_A0A355V480	HTH cro/C1-type domain-containing protein	NA
UHGV-0052696_3	eggNOG-mapper	1395587.P364_0124760	Transcriptional regulator	NA
UHGV-0052696_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052696_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052696_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052696_7	PHROG	phrog_3777	NA	unknown function
UHGV-0052696_7	eggNOG-mapper	411462.DORLON_00217	NA	NA
UHGV-0052696_7	Pfam	PF12957	NA	DUF3846
UHGV-0052696_7	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0052696_7	Structural annotation	PF12957	NA	NA
UHGV-0052696_10	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0052696_10	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-0052696_10	eggNOG-mapper	1321372.AQQB01000060_gene43	NA	NA
UHGV-0052696_11	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_11	UniRef90	UniRef90_A0A644XZ19	HNHc domain-containing protein	NA
UHGV-0052696_11	eggNOG-mapper	696281.Desru_1079	HNH endonuclease	NA
UHGV-0052696_11	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0052696_11	Structural annotation	PF13392	NA	NA
UHGV-0052696_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0052696_12	UniRef90	UniRef90_A0A1Y3WB67	NA	NA
UHGV-0052696_12	eggNOG-mapper	632335.Calkr_2093	NA	NA
UHGV-0052696_12	Pfam	PF14359	NA	DUF4406
UHGV-0052696_12	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0052696_14	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0052696_14	PHROG	phrog_1569	NA	unknown function
UHGV-0052696_14	UniRef90	UniRef90_S0EZN2	S-adenosylmethionine synthase	NA
UHGV-0052696_14	eggNOG-mapper	1303518.CCALI_02633	methionine adenosyltransferase activity	NA
UHGV-0052696_14	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0052696_14	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0052696_14	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0052696_14	NCBIFam	TIGR01034.1	methionine adenosyltransferase	NA
UHGV-0052696_14	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0052696_14	Structural annotation	PF02773, PF02772, PF00438, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0052696_15	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0052696_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052696_15	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0052696_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052696_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_18	UniRef90	UniRef90_UPI001C0EEAE6	NA	NA
UHGV-0052696_18	eggNOG-mapper	999411.HMPREF1092_03280	NA	NA
UHGV-0052696_18	Pfam	PF10926	NA	DUF2800
UHGV-0052696_18	COG	COG2887	RecB family exonuclease	NA
UHGV-0052696_18	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0052696_19	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_19	UniRef90	UniRef90_UPI0005D289CA	NA	NA
UHGV-0052696_19	eggNOG-mapper	689781.AUJX01000031_gene132	NA	NA
UHGV-0052696_19	Pfam	PF10926	NA	DUF2800
UHGV-0052696_19	COG	COG2887	RecB family exonuclease	NA
UHGV-0052696_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_20	UniRef90	UniRef90_A0A356MLM5	HNHc domain-containing protein	NA
UHGV-0052696_20	eggNOG-mapper	1129192.A0A0E3D9P0_9CAUD	HNH endonuclease	NA
UHGV-0052696_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0052696_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0052696_21	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052696_21	UniRef90	UniRef90_UPI001D0824E4	NA	NA
UHGV-0052696_21	eggNOG-mapper	1274524.BSONL12_06028	NA	NA
UHGV-0052696_21	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0052696_21	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0052696_22	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0052696_22	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0052696_22	UniRef90	UniRef90_UPI0019602850	DNA polymerase	NA
UHGV-0052696_22	eggNOG-mapper	1321782.HMPREF1986_02252	DNA polymerase A domain	NA
UHGV-0052696_22	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0052696_22	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0052696_22	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0052696_23	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0052696_23	UniRef90	UniRef90_UPI0018AC4218	virulence-associated E family protein	NA
UHGV-0052696_23	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0052696_23	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0052696_23	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0052696_23	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0052696_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_24	UniRef90	UniRef90_A0A542AIX4	VRR-NUC domain-containing protein	NA
UHGV-0052696_24	eggNOG-mapper	1089548.KI783301_gene2625	VRR-NUC domain protein	NA
UHGV-0052696_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0052696_24	Structural annotation	PF01870, MF_01490, NF011269, COG5321	NA	NA
UHGV-0052696_25	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0052696_25	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0052696_25	UniRef90	UniRef90_A0A0H5SHI0	Helicase ATP-binding domain-containing protein	NA
UHGV-0052696_25	eggNOG-mapper	1286171.EAL2_c19880	SNF2 family N-terminal domain	NA
UHGV-0052696_25	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0052696_25	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0052696_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0052696_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0052696_25	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0052696_26	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0052696_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0052696_26	UniRef90	UniRef90_A0A1F0ZPT3	Methyltransferase	NA
UHGV-0052696_26	eggNOG-mapper	1123299.AUKZ01000015_gene1695	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0052696_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0052696_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052696_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0052696_26	COG	COG0863	DNA modification methylase	NA
UHGV-0052696_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0052696_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0052696_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052696_27	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-0052696_27	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-0052696_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0052696_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052696_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0052696_28	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0052696_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0052696_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0052696_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0052696_29	UniRef90	UniRef90_UPI00141516AC	terminase large subunit	NA
UHGV-0052696_29	eggNOG-mapper	471855.Shel_08190	Phage Terminase	NA
UHGV-0052696_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0052696_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0052696_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0052696_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0052696_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0052696_30	UniRef90	UniRef90_UPI001AD6F2F5	phage portal protein	NA
UHGV-0052696_30	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0052696_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0052696_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0052696_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0052696_31	KOfam	K06904	NA	NA
UHGV-0052696_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0052696_31	UniRef90	UniRef90_UPI000B0EF50C	HK97 family phage prohead protease	NA
UHGV-0052696_31	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0052696_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0052696_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0052696_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0052696_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0052696_32	UniRef90	UniRef90_R4KAR4	Putative phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0052696_32	eggNOG-mapper	767817.Desgi_0033	phage major capsid protein, HK97 family	NA
UHGV-0052696_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0052696_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0052696_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0052696_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0052696_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0052696_36	PHROG	phrog_88	major tail protein	tail
UHGV-0052696_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0052696_39	PHROG	phrog_15002	NA	unknown function
UHGV-0052696_39	eggNOG-mapper	441768.ACL_0619	phage tail tape measure protein	NA
UHGV-0052696_39	COG	COG4372	NA	NA
UHGV-0052696_39	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0052696_40	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0052696_41	PHROG	phrog_7064	tail protein	tail
UHGV-0052696_41	eggNOG-mapper	1158601.I585_04167	NA	NA
UHGV-0052696_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0052696_44	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0052696_44	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0052696_44	Pfam	PF19789	NA	DUF6273
UHGV-0052696_44	Structural annotation	PF19789	NA	NA
UHGV-0052696_45	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0052696_45	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-0052696_45	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0052696_46	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0052696_46	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0052696_46	UniRef90	UniRef90_W0U5C0	Reverse transcriptase domain-containing protein	NA
UHGV-0052696_46	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0052696_46	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0052696_46	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0052696_46	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0052696_46	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0052696_48	PHROG	phrog_134	NA	unknown function
UHGV-0052696_48	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0052696_48	NCBIFam	TIGR01669.1	XkdX family protein	NA