UHGV-0052804

Genome information

Genome length 34,907 bps

CDS count 52

Completeness 94.48% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052804
vOTU ID	vOTU-066289
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64224
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.86
Jumbo phage	No

Genome content
Genome length	34,907 bps
GC content	56.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.48%
Average CDS length	625.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052804_1	KOfam	K02356	efp; elongation factor P	NA
UHGV-0052804_1	UniRef90	UniRef90_A0A416NF66	Elongation factor P	NA
UHGV-0052804_1	eggNOG-mapper	1408437.JNJN01000039_gene381	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	NA
UHGV-0052804_1	Pfam	PF08207	Elongation factor P (EF-P) KOW-like domain	EFP_N
UHGV-0052804_1	Pfam	PF01132	Elongation factor P (EF-P) OB domain	EFP
UHGV-0052804_1	Pfam	PF09285	Elongation factor P, C-terminal	Elong-fact-P_C
UHGV-0052804_1	NCBIFam	NF001810.0	elongation factor P	NA
UHGV-0052804_1	COG	COG0231	Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	NA
UHGV-0052804_1	HAMAP	MF_00141	Elongation factor P [efp]	NA
UHGV-0052804_2	KOfam	K14059	int; integrase	NA
UHGV-0052804_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0052804_2	UniRef90	UniRef90_A0A417F5S2	Site-specific integrase	NA
UHGV-0052804_2	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0052804_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0052804_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052804_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052804_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0052804_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0052804_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0052804_4	UniRef90	UniRef90_A0A845MZU5	Helix-turn-helix domain-containing protein	NA
UHGV-0052804_4	eggNOG-mapper	1235813.JCM10003_3456	Helix-turn-helix domain	NA
UHGV-0052804_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052804_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052804_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052804_5	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0052804_6	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0052804_6	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0052804_6	UniRef90	UniRef90_A0A417TMN9	BRCT domain-containing protein	NA
UHGV-0052804_6	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0052804_6	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0052804_6	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0052804_6	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0052804_6	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0052804_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0052804_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052804_7	UniRef90	UniRef90_A0A417HFZ4	XRE family transcriptional regulator	NA
UHGV-0052804_7	eggNOG-mapper	986075.CathTA2_2425	Transcriptional	NA
UHGV-0052804_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052804_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052804_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0052804_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052804_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052804_8	UniRef90	UniRef90_A0A417HG00	XRE family transcriptional regulator	NA
UHGV-0052804_8	eggNOG-mapper	1007096.BAGW01000035_gene1331	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052804_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052804_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0052804_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0052804_9	UniRef90	UniRef90_A0A417F5Y8	DNA-binding protein	NA
UHGV-0052804_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0052804_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0052804_10	UniRef90	UniRef90_A0A845MZ20	Helix-turn-helix domain-containing protein	NA
UHGV-0052804_10	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052804_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0052804_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0052804_10	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0052804_13	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052804_13	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0052804_13	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0052804_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0052804_13	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0052804_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0052804_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0052804_14	UniRef90	UniRef90_A0A416DGZ9	DNA helicase	NA
UHGV-0052804_14	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0052804_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0052804_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0052804_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0052804_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0052804_15	Structural annotation	PF07870	NA	NA
UHGV-0052804_17	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0052804_17	Structural annotation	PF02796	NA	NA
UHGV-0052804_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0052804_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0052804_18	UniRef90	UniRef90_A0A417F5K0	ParA family protein	NA
UHGV-0052804_18	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0052804_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0052804_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0052804_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0052804_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0052804_19	PHROG	phrog_27290	NA	unknown function
UHGV-0052804_19	UniRef90	UniRef90_A0A3E2XXY6	ParB domain-containing protein	NA
UHGV-0052804_19	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0052804_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052804_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0052804_19	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0052804_20	PHROG	phrog_1762	NA	unknown function
UHGV-0052804_20	UniRef90	UniRef90_A0A417W6G6	NA	NA
UHGV-0052804_20	eggNOG-mapper	1408324.JNJK01000011_gene333	NA	NA
UHGV-0052804_20	Pfam	PF11185	NA	DUF2971
UHGV-0052804_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052804_21	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0052804_21	Structural annotation	PF01446	NA	NA
UHGV-0052804_22	UniRef90	UniRef90_UPI001314958C	conjugal transfer protein	NA
UHGV-0052804_22	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0052804_23	Structural annotation	PF15188	NA	NA
UHGV-0052804_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052804_24	UniRef90	UniRef90_A0A417F5W2	HNH endonuclease	NA
UHGV-0052804_24	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0052804_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0052804_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052804_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0052804_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0052804_25	UniRef90	UniRef90_A0A417HFX2	Phage terminase small subunit P27 family	NA
UHGV-0052804_25	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0052804_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0052804_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0052804_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0052804_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0052804_26	KOfam	K03744	lemA; LemA protein	NA
UHGV-0052804_26	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0052804_26	UniRef90	UniRef90_A0A417TP98	LemA family protein	NA
UHGV-0052804_26	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0052804_26	Pfam	PF04011	LemA family	LemA
UHGV-0052804_26	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0052804_26	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0052804_27	PHROG	phrog_3886	NA	unknown function
UHGV-0052804_27	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0052804_28	PHROG	phrog_474	phosphofructokinase	other
UHGV-0052804_28	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0052804_28	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0052804_28	Pfam	PF19905	NA	DUF6378
UHGV-0052804_28	Structural annotation	PF19905	NA	NA
UHGV-0052804_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0052804_33	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0052804_33	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0052804_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0052804_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0052804_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0052804_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0052804_34	PHROG	phrog_1480	tail sheath	tail
UHGV-0052804_34	UniRef90	UniRef90_A0A416DH06	Phage tail protein	NA
UHGV-0052804_34	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0052804_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0052804_34	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0052804_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0052804_35	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0052804_35	eggNOG-mapper	1111454.HMPREF1250_0251	phage major capsid protein, HK97 family	NA
UHGV-0052804_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0052804_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0052804_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0052804_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0052804_36	PHROG	phrog_365	tail protein	tail
UHGV-0052804_36	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0052804_36	eggNOG-mapper	641107.CDLVIII_1345	Phage tail tube protein	NA
UHGV-0052804_36	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0052804_36	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0052804_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0052804_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0052804_37	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0052804_37	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0052804_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0052804_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0052804_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0052804_38	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0052804_38	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0052804_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0052804_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0052804_39	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0052804_39	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0052804_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0052804_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0052804_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0052804_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0052804_40	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0052804_40	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0052804_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0052804_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0052804_41	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0052804_42	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0052804_42	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0052804_42	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0052804_44	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0052804_44	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0052804_44	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0052804_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0052804_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0052804_45	PHROG	phrog_23201	NA	unknown function
UHGV-0052804_45	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0052804_45	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0052804_45	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0052804_45	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0052804_46	PHROG	phrog_400	tail protein	tail
UHGV-0052804_46	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0052804_46	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0052804_46	Pfam	PF05257	CHAP domain	CHAP
UHGV-0052804_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0052804_46	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0052804_47	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0052804_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0052804_48	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0052804_48	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0052804_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0052804_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0052804_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0052804_48	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0052804_49	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0052804_49	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0052804_49	Pfam	PF10934	NA	DUF2634
UHGV-0052804_49	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0052804_49	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0052804_50	PHROG	phrog_6	baseplate protein	tail
UHGV-0052804_50	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0052804_50	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0052804_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0052804_50	COG	COG3299	NA	NA
UHGV-0052804_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0052804_51	PHROG	phrog_521	tail protein	tail
UHGV-0052804_51	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0052804_51	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0052804_51	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0052804_51	COG	COG3778	NA	NA
UHGV-0052804_51	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0052804_52	COG	COG1196	Chromosome segregation ATPase Smc	NA