UHGV-0052917

Genome information

Genome length 41,575 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052917
vOTU ID	vOTU-008095
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_50503
BioSample	SAMEA2163248
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.93
Jumbo phage	No

Genome content
Genome length	41,575 bps
GC content	42.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.06%
Average CDS length	578.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052917_1	KOfam	K12573	rnr, vacB; ribonuclease R [EC:3.1.13.1]	NA
UHGV-0052917_1	PHROG	phrog_13933	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0052917_1	UniRef90	UniRef90_R6NMD4	Ribonuclease R	NA
UHGV-0052917_1	eggNOG-mapper	622312.ROSEINA2194_00724	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	NA
UHGV-0052917_1	Pfam	PF08206	Ribonuclease B OB domain	OB_RNB
UHGV-0052917_1	Pfam	PF17876	Cold shock domain	CSD2
UHGV-0052917_1	Pfam	PF00773	RNB domain	RNB
UHGV-0052917_1	Pfam	PF00575	S1 RNA binding domain	S1
UHGV-0052917_1	NCBIFam	TIGR02063.1	ribonuclease R	NA
UHGV-0052917_1	COG	COG0557	Exoribonuclease R	NA
UHGV-0052917_1	HAMAP	MF_01895	Ribonuclease R [rnr]	NA
UHGV-0052917_2	KOfam	K03664	smpB; SsrA-binding protein	NA
UHGV-0052917_2	PHROG	phrog_6791	NA	unknown function
UHGV-0052917_2	UniRef90	UniRef90_R6NVI3	SsrA-binding protein	NA
UHGV-0052917_2	eggNOG-mapper	622312.ROSEINA2194_00723	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0052917_2	Pfam	PF01668	SmpB protein	SmpB
UHGV-0052917_2	NCBIFam	NF003843.0	SsrA-binding protein SmpB	NA
UHGV-0052917_2	COG	COG0691	tmRNA-binding protein	NA
UHGV-0052917_2	HAMAP	MF_00023	SsrA-binding protein [smpB]	NA
UHGV-0052917_2	Structural annotation	PF01668, MF_00023, NF003843, COG0691	NA	NA
UHGV-0052917_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0052917_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0052917_3	UniRef90	UniRef90_R6NJQ5	Resolvase N-terminal domain protein	NA
UHGV-0052917_3	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-0052917_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0052917_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0052917_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0052917_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0052917_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0052917_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0052917_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0052917_4	UniRef90	UniRef90_R6PRJ3	DNA-binding helix-turn-helix protein	NA
UHGV-0052917_4	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052917_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052917_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0052917_7	AcrCatalog	cluster_86620	NA	NA
UHGV-0052917_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052917_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052917_8	UniRef90	UniRef90_R6NVH7	HTH cro/C1-type domain-containing protein	NA
UHGV-0052917_8	eggNOG-mapper	411470.RUMGNA_02090	NA	NA
UHGV-0052917_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0052917_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0052917_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0052917_10	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0052917_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0052917_10	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0052917_10	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0052917_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0052917_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052917_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0052917_13	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0052917_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052917_17	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0052917_17	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0052917_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0052917_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0052917_18	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0052917_18	eggNOG-mapper	1163389.OOM_1312	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0052917_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0052917_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0052917_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0052917_19	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052917_19	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0052917_19	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0052917_20	PHROG	phrog_24368	NA	unknown function
UHGV-0052917_20	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0052917_21	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0052917_22	PHROG	phrog_20593	NA	unknown function
UHGV-0052917_23	PHROG	phrog_20593	NA	unknown function
UHGV-0052917_26	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0052917_27	PHROG	phrog_8470	NA	unknown function
UHGV-0052917_27	UniRef90	UniRef90_UPI001920BF2D	PcfJ domain-containing protein	NA
UHGV-0052917_27	eggNOG-mapper	1235799.C818_00266	PcfJ-like protein	NA
UHGV-0052917_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0052917_27	Structural annotation	PF14284	NA	NA
UHGV-0052917_28	PHROG	phrog_15077	NA	unknown function
UHGV-0052917_28	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0052917_28	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0052917_28	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0052917_31	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0052917_32	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0052917_32	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0052917_34	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0052917_34	UniRef90	UniRef90_UPI00164BDD89	N-6 DNA methylase	NA
UHGV-0052917_34	eggNOG-mapper	1095750.HMPREF9970_0171	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0052917_34	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0052917_34	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0052917_34	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0052917_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0052917_35	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0052917_35	UniRef90	UniRef90_UPI00189920FD	N-6 DNA methylase	NA
UHGV-0052917_35	eggNOG-mapper	1095750.HMPREF9970_0172	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0052917_35	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0052917_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0052917_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0052917_35	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0052917_36	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0052917_36	PHROG	phrog_5889	NA	unknown function
UHGV-0052917_36	UniRef90	UniRef90_A0A417K786	HD domain-containing protein	NA
UHGV-0052917_36	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0052917_36	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0052917_36	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0052917_37	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0052917_37	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0052917_38	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0052917_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0052917_38	UniRef90	UniRef90_R6P5B8	DNA-binding helix-turn-helix protein	NA
UHGV-0052917_38	eggNOG-mapper	1408321.JNJD01000010_gene1463	Helix-turn-helix XRE-family like proteins	NA
UHGV-0052917_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052917_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052917_39	PHROG	phrog_12732	NA	unknown function
UHGV-0052917_42	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0052917_42	UniRef90	UniRef90_A0A0A7RTX1	Terminase small subunit	NA
UHGV-0052917_42	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0052917_42	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0052917_42	Structural annotation	PF07141	NA	NA
UHGV-0052917_43	PHROG	phrog_5717	tail protein	tail
UHGV-0052917_43	UniRef90	UniRef90_A0A321L581	Phage tail protein	NA
UHGV-0052917_43	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0052917_43	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0052917_45	PHROG	phrog_4105	NA	unknown function
UHGV-0052917_45	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0052917_46	PHROG	phrog_443	holin	lysis
UHGV-0052917_46	UniRef90	UniRef90_A0A315ZUA7	Phage r1t holin	NA
UHGV-0052917_46	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0052917_46	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0052917_46	Structural annotation	PF16945	NA	NA
UHGV-0052917_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052917_47	PHROG	phrog_435	endolysin	lysis
UHGV-0052917_47	UniRef90	UniRef90_R6NF86	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052917_47	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0052917_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0052917_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052917_47	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0052917_48	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0052917_48	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-0052917_48	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0052917_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0052917_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052917_48	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0052917_49	PHROG	phrog_933	NA	unknown function
UHGV-0052917_50	PHROG	phrog_1066	NA	unknown function
UHGV-0052917_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0052917_51	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0052917_51	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0052917_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0052917_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0052917_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0052917_51	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0052917_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-0052917_52	UniRef90	UniRef90_R6P552	Phage portal protein	NA
UHGV-0052917_52	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0052917_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0052917_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0052917_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0052917_53	KOfam	K06904	NA	NA
UHGV-0052917_53	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0052917_53	UniRef90	UniRef90_R6PV53	HK97 family phage prohead protease	NA
UHGV-0052917_53	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0052917_53	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0052917_53	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0052917_53	COG	COG3740	Phage head maturation protease	NA
UHGV-0052917_53	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0052917_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0052917_54	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-0052917_54	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0052917_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0052917_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0052917_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0052917_54	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0052917_55	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0052917_55	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0052917_55	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0052917_55	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0052917_56	PHROG	phrog_25	head closure Hc1	connector
UHGV-0052917_56	UniRef90	UniRef90_R6NQX3	Putative phage head-tail adaptor	NA
UHGV-0052917_56	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0052917_56	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0052917_56	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0052917_57	Structural annotation	TIGR01725	NA	NA
UHGV-0052917_58	Structural annotation	PF05657	NA	NA
UHGV-0052917_59	PHROG	phrog_88	major tail protein	tail
UHGV-0052917_59	UniRef90	UniRef90_A0A5D4RFL7	Phage tail protein	NA
UHGV-0052917_59	eggNOG-mapper	1120971.AUCA01000066_gene599	Phage tail tube protein	NA
UHGV-0052917_59	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0052917_59	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0052917_59	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0052917_62	PHROG	phrog_5218	NA	unknown function
UHGV-0052917_62	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0052917_62	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0052917_62	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0052917_62	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0052917_62	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0052917_63	PHROG	phrog_36410	NA	unknown function
UHGV-0052917_63	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0052917_63	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0052917_63	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0052917_63	COG	COG4722	Phage-related protein YomH	NA
UHGV-0052917_63	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0052917_64	PHROG	phrog_538	minor tail protein	tail
UHGV-0052917_64	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0052917_64	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0052917_64	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0052917_64	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0052917_65	PHROG	phrog_1220	head protein	head and packaging
UHGV-0052917_65	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0052917_65	Structural annotation	PF20747	NA	NA
UHGV-0052917_66	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0052917_66	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0052917_66	UniRef90	UniRef90_R6NSQ6	HicB-like domain-containing protein	NA
UHGV-0052917_66	eggNOG-mapper	679201.HMPREF9334_00315	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0052917_66	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0052917_66	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0052917_66	Structural annotation	PF15919, COG1598	NA	NA