UHGV-0053078

Genome information

Genome length 41,704 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053078
vOTU ID	vOTU-008163
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_36800
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	83.33
Jumbo phage	No

Genome content
Genome length	41,704 bps
GC content	50.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.84%
Average CDS length	569.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053078_1	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0053078_2	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0053078_3	PHROG	phrog_608	holin	lysis
UHGV-0053078_3	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0053078_3	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0053078_3	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0053078_3	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0053078_4	PHROG	phrog_37604	NA	unknown function
UHGV-0053078_4	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0053078_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0053078_5	PHROG	phrog_291	endolysin	lysis
UHGV-0053078_5	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0053078_5	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0053078_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0053078_5	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0053078_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0053078_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0053078_7	PHROG	phrog_9534	head protein	head and packaging
UHGV-0053078_7	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0053078_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0053078_8	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0053078_8	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0053078_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0053078_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053078_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053078_9	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0053078_9	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0053078_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0053078_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0053078_10	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0053078_10	COG	COG5412	Phage-related protein	NA
UHGV-0053078_10	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0053078_11	PHROG	phrog_23464	NA	unknown function
UHGV-0053078_11	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0053078_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0053078_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0053078_13	PHROG	phrog_1021	NA	unknown function
UHGV-0053078_13	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0053078_14	PHROG	phrog_885	major tail protein	tail
UHGV-0053078_14	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0053078_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0053078_15	PHROG	phrog_957	head protein	head and packaging
UHGV-0053078_15	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0053078_15	Structural annotation	PF12691	NA	NA
UHGV-0053078_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053078_16	UniRef90	UniRef90_UPI001373FCFF	HK97 gp10 family phage protein	NA
UHGV-0053078_16	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0053078_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053078_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0053078_17	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0053078_17	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0053078_17	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0053078_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053078_18	PHROG	phrog_1236	head protein	head and packaging
UHGV-0053078_18	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0053078_18	Structural annotation	PF05135	NA	NA
UHGV-0053078_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-0053078_19	UniRef90	UniRef90_UPI001D09539E	N4-gp56 family major capsid protein	NA
UHGV-0053078_19	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0053078_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0053078_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0053078_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053078_20	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-0053078_20	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0053078_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053078_20	Structural annotation	PF06810	NA	NA
UHGV-0053078_21	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053078_21	PHROG	phrog_14030	NA	unknown function
UHGV-0053078_21	UniRef90	UniRef90_A0A1Y4F727	NlpC/P60 domain-containing protein	NA
UHGV-0053078_21	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0053078_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0053078_21	Pfam	PF01476	LysM domain	LysM
UHGV-0053078_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0053078_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0053078_21	Structural annotation	PF05382, PF01471, NF038080, NF033742, COG3409, COG1388	NA	NA
UHGV-0053078_22	PHROG	phrog_443	holin	lysis
UHGV-0053078_22	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0053078_22	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0053078_22	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0053078_22	Structural annotation	PF16945	NA	NA
UHGV-0053078_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0053078_24	UniRef90	UniRef90_A0A415N157	Phage_Mu_F domain-containing protein	NA
UHGV-0053078_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0053078_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0053078_24	COG	COG2369	NA	NA
UHGV-0053078_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0053078_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053078_25	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-0053078_25	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0053078_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053078_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0053078_27	PHROG	phrog_937	hemolysin	other
UHGV-0053078_27	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0053078_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053078_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0053078_28	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-0053078_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0053078_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0053078_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0053078_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0053078_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053078_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0053078_29	PHROG	phrog_1233	NA	unknown function
UHGV-0053078_29	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0053078_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0053078_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0053078_31	UniRef90	UniRef90_A0A3R6SKK4	Terminase small subunit	NA
UHGV-0053078_31	eggNOG-mapper	195103.CPF_0948	Terminase small subunit	NA
UHGV-0053078_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0053078_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0053078_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0053078_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053078_32	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0053078_32	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0053078_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0053078_32	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0053078_33	Pfam	PF20258	Aminomethyltransferase beta-barrel domain	tRNA_Me_trans_C
UHGV-0053078_33	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0053078_38	PHROG	phrog_22543	NA	unknown function
UHGV-0053078_38	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0053078_38	Structural annotation	PF18073	NA	NA
UHGV-0053078_39	PHROG	phrog_924	NA	unknown function
UHGV-0053078_39	UniRef90	UniRef90_A0A7G9WJH9	NA	NA
UHGV-0053078_39	Pfam	PF04448	NA	DUF551
UHGV-0053078_40	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-0053078_42	PHROG	phrog_9804	NA	unknown function
UHGV-0053078_42	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0053078_42	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0053078_42	AcrCatalog	cluster_137185	NA	NA
UHGV-0053078_42	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0053078_42	Structural annotation	PF11417	NA	NA
UHGV-0053078_43	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053078_43	UniRef90	UniRef90_A0A417W6N9	Phage_rep_org_N domain-containing protein	NA
UHGV-0053078_43	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0053078_43	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0053078_43	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0053078_43	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0053078_44	PHROG	phrog_4973	NA	unknown function
UHGV-0053078_44	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0053078_44	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-0053078_44	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0053078_44	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0053078_45	PHROG	phrog_6721	NA	unknown function
UHGV-0053078_45	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0053078_45	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0053078_46	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0053078_46	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0053078_46	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0053078_46	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0053078_46	Pfam	PF00692	dUTPase	dUTPase
UHGV-0053078_46	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0053078_46	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0053078_46	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0053078_48	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053078_48	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0053078_48	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0053078_48	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0053078_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053078_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053078_50	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-0053078_50	eggNOG-mapper	1280685.AUKC01000081_gene1299	Single-strand binding protein family	NA
UHGV-0053078_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053078_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053078_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053078_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053078_50	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0053078_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0053078_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053078_51	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0053078_51	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0053078_51	Pfam	PF03837	RecT family	RecT
UHGV-0053078_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0053078_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0053078_51	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0053078_53	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053078_53	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0053078_53	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0053078_53	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0053078_53	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0053078_53	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0053078_53	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0053078_57	UniRef90	UniRef90_A0A354WRF5	NA	NA
UHGV-0053078_57	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0053078_57	Pfam	PF05339	NA	DUF739
UHGV-0053078_57	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0053078_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0053078_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0053078_62	UniRef90	UniRef90_A0A2B7YNI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0053078_62	eggNOG-mapper	1321779.HMPREF1984_01336	sequence-specific DNA binding	NA
UHGV-0053078_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053078_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053078_62	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0053078_63	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0053078_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0053078_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0053078_64	UniRef90	UniRef90_A0A0V8QI90	Recombinase domain-containing protein	NA
UHGV-0053078_64	eggNOG-mapper	483218.BACPEC_01184	Resolvase, N terminal domain	NA
UHGV-0053078_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0053078_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-0053078_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0053078_64	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0053078_65	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0053078_66	UniRef90	UniRef90_UPI001106168F	SAP domain-containing protein	NA
UHGV-0053078_66	eggNOG-mapper	1304866.K413DRAFT_1250	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0053078_67	PHROG	phrog_372	tail protein	tail
UHGV-0053078_67	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0053078_67	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0053078_67	Pfam	PF05895	NA	DUF859
UHGV-0053078_67	COG	COG4675	Phage tail collar domain	NA
UHGV-0053078_67	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0053078_68	PHROG	phrog_3558	tail protein	tail
UHGV-0053078_68	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0053078_68	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0053078_68	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0053078_68	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0053078_68	COG	COG4926	Phage-related protein	NA
UHGV-0053078_68	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0053078_69	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053078_69	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0053078_69	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0053078_69	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA