UHGV-0053094

Genome information

Genome length 41,933 bps

CDS count 50

Completeness 84.77% (medium-quality)

geNomad score 0.9505

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053094
vOTU ID	vOTU-015300
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_40059
BioSample	SAMEA2158062
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9505
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.56
Jumbo phage	No

Genome content
Genome length	41,933 bps
GC content	54.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.64%
Average CDS length	745.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053094_1	eggNOG-mapper	1501391.LG35_09045	NA	NA
UHGV-0053094_2	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0053094_3	PHROG	phrog_38431	NA	unknown function
UHGV-0053094_3	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0053094_3	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-0053094_5	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0053094_5	Structural annotation	PF10781	NA	NA
UHGV-0053094_6	PHROG	phrog_31654	NA	unknown function
UHGV-0053094_6	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0053094_7	PHROG	phrog_16490	NA	unknown function
UHGV-0053094_7	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0053094_7	eggNOG-mapper	445970.ALIPUT_01632	NA	NA
UHGV-0053094_8	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0053094_8	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0053094_10	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0053094_11	PHROG	phrog_17422	NA	unknown function
UHGV-0053094_11	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-0053094_11	eggNOG-mapper	1203550.HMPREF1475_00568	cellulase activity	NA
UHGV-0053094_11	COG	COG4926	Phage-related protein	NA
UHGV-0053094_12	PHROG	phrog_6305	tail protein	tail
UHGV-0053094_12	eggNOG-mapper	1122971.BAME01000043_gene3770	NA	NA
UHGV-0053094_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0053094_13	PHROG	phrog_14295	NA	unknown function
UHGV-0053094_13	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0053094_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0053094_14	PHROG	phrog_14983	NA	unknown function
UHGV-0053094_14	eggNOG-mapper	1121098.HMPREF1534_01966	NA	NA
UHGV-0053094_14	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0053094_15	PHROG	phrog_6767	NA	unknown function
UHGV-0053094_15	eggNOG-mapper	1121098.HMPREF1534_01967	NA	NA
UHGV-0053094_15	Structural annotation	PF14874, PF10618, TIGR01603, COG5437	NA	NA
UHGV-0053094_16	eggNOG-mapper	1121098.HMPREF1534_01968	NA	NA
UHGV-0053094_17	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0053094_17	PHROG	phrog_3513	endolysin	lysis
UHGV-0053094_17	UniRef90	UniRef90_UPI001B39E3F9	glucosaminidase domain-containing protein	NA
UHGV-0053094_17	eggNOG-mapper	1203611.KB894547_gene2602	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0053094_17	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0053094_17	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0053094_17	Structural annotation	PF01832, TIGR02541, COG1705	NA	NA
UHGV-0053094_18	PHROG	phrog_11320	NA	unknown function
UHGV-0053094_18	UniRef90	UniRef90_UPI001B3A4CE0	BACON domain-containing protein	NA
UHGV-0053094_18	eggNOG-mapper	457424.BFAG_01447	NA	NA
UHGV-0053094_18	Pfam	PF19190	Viral BACON domain	BACON_2
UHGV-0053094_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053094_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0053094_19	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-0053094_19	UniRef90	UniRef90_UPI001B3A749B	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0053094_19	eggNOG-mapper	1235813.JCM10003_644	NA	NA
UHGV-0053094_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0053094_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0053094_19	Structural annotation	PF00574, PF10123, MF_00444, NF011090, COG0740	NA	NA
UHGV-0053094_20	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053094_20	UniRef90	UniRef90_UPI001B3A5898	NA	NA
UHGV-0053094_20	eggNOG-mapper	742727.HMPREF9447_01706	NA	NA
UHGV-0053094_20	Pfam	PF08822	NA	DUF1804
UHGV-0053094_20	COG	COG5484	NA	NA
UHGV-0053094_20	Structural annotation	PF06056	NA	NA
UHGV-0053094_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0053094_21	eggNOG-mapper	1122971.BAME01000043_gene3756	NA	NA
UHGV-0053094_21	COG	COG5362	Phage terminase large subunit	NA
UHGV-0053094_21	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5323	NA	NA
UHGV-0053094_22	PHROG	phrog_195	head-tail adaptor	connector
UHGV-0053094_22	UniRef90	UniRef90_UPI001B3A79A5	NA	NA
UHGV-0053094_22	eggNOG-mapper	1121098.HMPREF1534_03370	NA	NA
UHGV-0053094_22	Pfam	PF07030	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
UHGV-0053094_22	COG	COG4387	NA	NA
UHGV-0053094_22	Structural annotation	PF07030, COG4387	NA	NA
UHGV-0053094_23	PHROG	phrog_35074	NA	unknown function
UHGV-0053094_23	UniRef90	UniRef90_UPI001B3A3E48	NA	NA
UHGV-0053094_23	eggNOG-mapper	1122971.BAME01000043_gene3754	NA	NA
UHGV-0053094_23	Pfam	PF06074	NA	DUF935
UHGV-0053094_23	COG	COG4383	NA	NA
UHGV-0053094_24	PHROG	phrog_19194	NA	unknown function
UHGV-0053094_24	UniRef90	UniRef90_A0A143Y058	Phage Mu protein F like protein	NA
UHGV-0053094_24	eggNOG-mapper	1121098.HMPREF1534_00291	Phage Mu protein F like protein	NA
UHGV-0053094_24	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0053094_24	COG	COG2369	NA	NA
UHGV-0053094_24	Structural annotation	PF18798, PF04233, TIGR01641	NA	NA
UHGV-0053094_25	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0053094_25	UniRef90	UniRef90_A0A143XV78	Phage virion morphogenesis family protein	NA
UHGV-0053094_25	eggNOG-mapper	585502.HMPREF0645_2513	Phage virion morphogenesis	NA
UHGV-0053094_25	COG	COG5005	NA	NA
UHGV-0053094_25	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0053094_26	PHROG	phrog_6911	NA	unknown function
UHGV-0053094_26	eggNOG-mapper	1122971.BAME01000043_gene3749	NA	NA
UHGV-0053094_26	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0053094_27	PHROG	phrog_17154	NA	unknown function
UHGV-0053094_27	UniRef90	UniRef90_UPI001B39F684	transposase	NA
UHGV-0053094_27	eggNOG-mapper	1121098.HMPREF1534_03376	NA	NA
UHGV-0053094_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0053094_30	UniRef90	UniRef90_A0A143XX02	Bro-N domain-containing protein	NA
UHGV-0053094_30	eggNOG-mapper	1122983.BAJY01000001_gene211	BRO family, N-terminal domain	NA
UHGV-0053094_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0053094_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0053094_32	PHROG	phrog_846	NA	unknown function
UHGV-0053094_32	UniRef90	UniRef90_UPI001B3A6488	NA	NA
UHGV-0053094_32	eggNOG-mapper	1235813.JCM10003_625	NA	NA
UHGV-0053094_32	Pfam	PF11363	NA	DUF3164
UHGV-0053094_32	Structural annotation	PF11363	NA	NA
UHGV-0053094_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0053094_38	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0053094_38	UniRef90	UniRef90_A0A374A0C9	Cytosine-specific methyltransferase	NA
UHGV-0053094_38	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0053094_38	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0053094_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0053094_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053094_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0053094_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0053094_39	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0053094_39	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0053094_39	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-0053094_39	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-0053094_39	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0053094_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0053094_39	COG	COG0863	DNA modification methylase	NA
UHGV-0053094_39	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0053094_40	PHROG	phrog_14123	NA	unknown function
UHGV-0053094_40	eggNOG-mapper	1121101.HMPREF1532_03592	NA	NA
UHGV-0053094_41	PHROG	phrog_5781	NA	unknown function
UHGV-0053094_41	UniRef90	UniRef90_UPI001B3A6A86	NA	NA
UHGV-0053094_41	eggNOG-mapper	1127692.HMPREF9075_00061	NA	NA
UHGV-0053094_41	Pfam	PF14359	NA	DUF4406
UHGV-0053094_41	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0053094_42	PHROG	phrog_6891	ATPase	other
UHGV-0053094_42	UniRef90	UniRef90_A0A3D1NQZ7	AAA domain-containing protein	NA
UHGV-0053094_42	eggNOG-mapper	457424.BFAG_02805	ATP-dependent serine protease	NA
UHGV-0053094_42	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-0053094_42	Structural annotation	PF03796, MF_01498, TIGR00416, COG1066	NA	NA
UHGV-0053094_43	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0053094_43	UniRef90	UniRef90_A0A1Y3WT31	DNA transposition protein	NA
UHGV-0053094_43	eggNOG-mapper	1122989.KB898603_gene89	AAA domain	NA
UHGV-0053094_43	Pfam	PF13401	AAA domain	AAA_22
UHGV-0053094_43	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0053094_43	Structural annotation	PF13401, MF_01509, TIGR03015, COG2842	NA	NA
UHGV-0053094_44	KOfam	K07497	K07497; putative transposase	NA
UHGV-0053094_44	PHROG	phrog_310	transposase	integration and excision
UHGV-0053094_44	UniRef90	UniRef90_UPI001B3A789B	kinase	NA
UHGV-0053094_44	eggNOG-mapper	1121098.HMPREF1534_01990	Transposase and inactivated derivatives	NA
UHGV-0053094_44	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0053094_44	Structural annotation	PF02914, PF09039, PF09299, NF033594, COG2801	NA	NA
UHGV-0053094_46	PHROG	phrog_16858	NA	unknown function
UHGV-0053094_46	UniRef90	UniRef90_A0A3D1NSS9	ArsR family transcriptional regulator	NA
UHGV-0053094_49	UniRef90	UniRef90_A0A1J5KIT5	Peptidase A2 domain-containing protein	NA
UHGV-0053094_49	eggNOG-mapper	1501391.LG35_09045	NA	NA
UHGV-0053094_49	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0053094_50	UniRef90	UniRef90_A0A413LB83	NA	NA
UHGV-0053094_50	eggNOG-mapper	1033732.CAHI01000027_gene622	NA	NA
UHGV-0053094_50	Pfam	PF08902	NA	DUF1848
UHGV-0053094_50	COG	COG1533	DNA repair photolyase	NA