UHGV-0053101

Genome information

Genome length 32,274 bps

CDS count 56

Completeness 82.24% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053101
vOTU ID	vOTU-039729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32333
BioSample	SAMEA2148412
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.67
Jumbo phage	No

Genome content
Genome length	32,274 bps
GC content	41.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.99%
Average CDS length	532.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053101_1	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0053101_1	PHROG	phrog_366	tail fiber protein	tail
UHGV-0053101_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0053101_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053101_2	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0053101_2	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0053101_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053101_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053101_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053101_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0053101_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053101_3	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-0053101_3	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0053101_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053101_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053101_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053101_4	KOfam	K06904	NA	NA
UHGV-0053101_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0053101_4	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0053101_4	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0053101_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0053101_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0053101_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0053101_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0053101_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053101_5	UniRef90	UniRef90_A0A1Y4UTW1	Phage major capsid protein	NA
UHGV-0053101_5	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0053101_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053101_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053101_5	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053101_7	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0053101_7	eggNOG-mapper	1536774.H70357_10640	NA	NA
UHGV-0053101_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0053101_8	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0053101_8	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0053101_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053101_9	Structural annotation	TIGR01725	NA	NA
UHGV-0053101_10	Structural annotation	PF05657	NA	NA
UHGV-0053101_11	PHROG	phrog_88	major tail protein	tail
UHGV-0053101_11	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0053101_11	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0053101_11	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0053101_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0053101_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0053101_13	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0053101_13	PHROG	phrog_23464	NA	unknown function
UHGV-0053101_13	UniRef90	UniRef90_F6DMI3	G-protein, gamma-like subunit	NA
UHGV-0053101_13	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0053101_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0053101_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053101_14	UniRef90	UniRef90_A0A843FD70	Phage tail family protein	NA
UHGV-0053101_14	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0053101_14	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0053101_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0053101_15	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0053101_15	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0053101_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0053101_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053101_16	PHROG	phrog_1220	head protein	head and packaging
UHGV-0053101_16	eggNOG-mapper	931626.Awo_c34980	COG NOG18825 non supervised orthologous group	NA
UHGV-0053101_16	Structural annotation	PF20747	NA	NA
UHGV-0053101_18	KOfam	K14059	int; integrase	NA
UHGV-0053101_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0053101_18	UniRef90	UniRef90_UPI000344CB14	tyrosine-type recombinase/integrase	NA
UHGV-0053101_18	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0053101_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0053101_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053101_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053101_18	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0053101_19	PHROG	phrog_87	metallo-protease	other
UHGV-0053101_19	UniRef90	UniRef90_A0A6A7KAL1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053101_19	eggNOG-mapper	768704.Desmer_3286	NA	NA
UHGV-0053101_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053101_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053101_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053101_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0053101_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053101_20	UniRef90	UniRef90_A0A110A749	Transcriptional repressor DicA	NA
UHGV-0053101_20	eggNOG-mapper	1292035.H476_1037	sequence-specific DNA binding	NA
UHGV-0053101_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053101_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053101_21	PHROG	phrog_6058	NA	unknown function
UHGV-0053101_21	eggNOG-mapper	1462527.CCDM010000010_gene482	NA	NA
UHGV-0053101_21	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0053101_23	PHROG	phrog_22529	NA	unknown function
UHGV-0053101_23	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0053101_23	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0053101_23	Pfam	PF06725	3D domain	3D
UHGV-0053101_23	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0053101_23	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0053101_25	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0053101_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053101_26	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0053101_26	UniRef90	UniRef90_UPI00164BA94B	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0053101_26	eggNOG-mapper	1235802.C823_06033	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0053101_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0053101_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0053101_26	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0053101_27	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053101_27	UniRef90	UniRef90_A0A7K3ZA74	HNH endonuclease	NA
UHGV-0053101_27	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0053101_28	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0053101_28	UniRef90	UniRef90_UPI0011C8CF3E	NA	NA
UHGV-0053101_28	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0053101_28	Pfam	PF14359	NA	DUF4406
UHGV-0053101_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0053101_28	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0053101_29	UniRef90	UniRef90_A0A2W4KAT3	Transcriptional regulator	NA
UHGV-0053101_29	eggNOG-mapper	203119.Cthe_2469	phage transcriptional regulator, RinA family	NA
UHGV-0053101_29	Pfam	PF07374	NA	DUF1492
UHGV-0053101_29	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0053101_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053101_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053101_30	UniRef90	UniRef90_A0A7S7EVA4	Single-stranded DNA-binding protein	NA
UHGV-0053101_30	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0053101_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053101_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053101_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053101_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053101_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0053101_32	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053101_32	UniRef90	UniRef90_UPI001C613D0D	site-specific DNA-methyltransferase	NA
UHGV-0053101_32	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-0053101_32	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0053101_32	COG	COG0863	DNA modification methylase	NA
UHGV-0053101_35	PHROG	phrog_33451	NA	unknown function
UHGV-0053101_35	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0053101_35	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0053101_41	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0053101_41	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0053101_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0053101_41	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0053101_42	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0053101_42	PHROG	phrog_35646	sporulation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053101_42	UniRef90	UniRef90_A0A1G6H533	Stage V sporulation protein S	NA
UHGV-0053101_42	eggNOG-mapper	1121472.AQWN01000001_gene160	PFAM Stage V sporulation protein S	NA
UHGV-0053101_42	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0053101_42	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0053101_42	Structural annotation	PF04232, MF_01122, NF003088, COG2359	NA	NA
UHGV-0053101_43	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0053101_43	UniRef90	UniRef90_A0A3D2D5X9	DNA modification methylase (Fragment)	NA
UHGV-0053101_43	eggNOG-mapper	398512.JQKC01000005_gene5433	NA	NA
UHGV-0053101_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0053101_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0053101_43	COG	COG0863	DNA modification methylase	NA
UHGV-0053101_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0053101_44	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0053101_44	UniRef90	UniRef90_A0A843J778	Type II methyltransferase	NA
UHGV-0053101_44	eggNOG-mapper	1027273.GZ77_21170	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0053101_44	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0053101_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0053101_44	COG	COG0863	DNA modification methylase	NA
UHGV-0053101_44	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0053101_45	PHROG	phrog_4105	NA	unknown function
UHGV-0053101_46	PHROG	phrog_13256	NA	unknown function
UHGV-0053101_46	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0053101_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053101_48	PHROG	phrog_435	endolysin	lysis
UHGV-0053101_48	UniRef90	UniRef90_UPI001655B953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053101_48	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0053101_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0053101_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053101_48	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0053101_49	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0053101_49	UniRef90	UniRef90_A0A2Z4W9B1	Xaa-His dipeptidase	NA
UHGV-0053101_49	eggNOG-mapper	86416.Clopa_0334	transposase activity	NA
UHGV-0053101_49	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0053101_49	Structural annotation	PF07141	NA	NA
UHGV-0053101_50	eggNOG-mapper	756499.Desde_1344	nuclear chromosome segregation	NA
UHGV-0053101_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0053101_51	Structural annotation	NF040910	NA	NA
UHGV-0053101_52	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0053101_52	PHROG	phrog_18593	NA	unknown function
UHGV-0053101_52	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0053101_52	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0053101_52	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0053101_52	Structural annotation	PF14600	NA	NA
UHGV-0053101_53	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0053101_53	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0053101_53	eggNOG-mapper	927704.SELR_18240	adenylate kinase activity	NA
UHGV-0053101_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053101_53	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-0053101_53	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0053101_56	PHROG	phrog_20665	NA	unknown function