UHGV-0053106

Genome information

Genome length 36,228 bps

CDS count 64

Completeness 97.69% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053106
vOTU ID	vOTU-010194
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32323
BioSample	SAMEA2148412
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.15
Jumbo phage	No

Genome content
Genome length	36,228 bps
GC content	27.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.06%
Average CDS length	536.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053106_2	KOfam	K22227	ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]	NA
UHGV-0053106_2	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0053106_2	UniRef90	UniRef90_UPI0007758E9B	radical SAM protein	NA
UHGV-0053106_2	eggNOG-mapper	264199.stu0920	radical SAM domain protein	NA
UHGV-0053106_2	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0053106_2	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0053106_2	Pfam	PF13186	Iron-sulfur cluster-binding domain	SPASM
UHGV-0053106_2	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-0053106_2	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0053106_3	PHROG	phrog_7566	NA	unknown function
UHGV-0053106_3	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0053106_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053106_4	PHROG	phrog_7698	endolysin	lysis
UHGV-0053106_4	UniRef90	UniRef90_A0A4D6B3C2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053106_4	eggNOG-mapper	1123315.AUIP01000001_gene1438	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0053106_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0053106_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0053106_4	COG	COG1388	LysM repeat	NA
UHGV-0053106_4	Structural annotation	PF05036, PF01510, PF08230, MF_04111, MF_02022, NF008758, COG3023	NA	NA
UHGV-0053106_6	eggNOG-mapper	1410653.JHVC01000032_gene1035	NA	NA
UHGV-0053106_7	PHROG	phrog_1863	NA	unknown function
UHGV-0053106_7	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-0053106_8	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0053106_8	UniRef90	UniRef90_A0A843GPS8	Phage tail assembly chaperone	NA
UHGV-0053106_8	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0053106_8	Structural annotation	PF16778	NA	NA
UHGV-0053106_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0053106_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0053106_9	UniRef90	UniRef90_A0A7X0LXI1	Reverse transcriptase domain-containing protein	NA
UHGV-0053106_9	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0053106_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0053106_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0053106_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0053106_10	PHROG	phrog_5302	tail protein	tail
UHGV-0053106_10	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0053106_10	eggNOG-mapper	935948.KE386495_gene1318	NA	NA
UHGV-0053106_10	Structural annotation	COG1262	NA	NA
UHGV-0053106_11	PHROG	phrog_18725	NA	unknown function
UHGV-0053106_11	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0053106_12	PHROG	phrog_13879	NA	unknown function
UHGV-0053106_12	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-0053106_12	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0053106_13	PHROG	phrog_1194	NA	unknown function
UHGV-0053106_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0053106_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0053106_14	UniRef90	UniRef90_UPI000F44D2EE	tape measure protein	NA
UHGV-0053106_14	eggNOG-mapper	86416.Clopa_0587	phage tail tape measure protein	NA
UHGV-0053106_14	COG	COG1511	NA	NA
UHGV-0053106_16	Structural annotation	PF12363	NA	NA
UHGV-0053106_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0053106_19	PHROG	phrog_78	tail terminator	connector
UHGV-0053106_19	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0053106_19	Structural annotation	PF05657	NA	NA
UHGV-0053106_20	eggNOG-mapper	665956.HMPREF1032_03623	NA	NA
UHGV-0053106_20	Structural annotation	TIGR01725	NA	NA
UHGV-0053106_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0053106_23	Structural annotation	PF12949, PF18885	NA	NA
UHGV-0053106_24	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0053106_24	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0053106_25	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0053106_25	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0053106_25	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0053106_25	Pfam	PF14265	NA	DUF4355
UHGV-0053106_25	Structural annotation	PF14265	NA	NA
UHGV-0053106_27	UniRef90	UniRef90_R5MSH4	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-0053106_27	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0053106_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053106_28	UniRef90	UniRef90_R5MTF8	SPP1 family phage portal protein	NA
UHGV-0053106_28	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0053106_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053106_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0053106_29	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0053106_29	UniRef90	UniRef90_R5M9P5	Terminase_6C domain-containing protein	NA
UHGV-0053106_29	eggNOG-mapper	1522092.A0A090EUA8_9CAUD	Pfam:Terminase_6C	NA
UHGV-0053106_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0053106_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0053106_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0053106_29	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0053106_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0053106_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0053106_30	UniRef90	UniRef90_R5MF68	Terminase small subunit	NA
UHGV-0053106_30	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0053106_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0053106_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0053106_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0053106_31	PHROG	phrog_1233	NA	unknown function
UHGV-0053106_31	eggNOG-mapper	1151292.QEW_4538	NA	NA
UHGV-0053106_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053106_34	UniRef90	UniRef90_R5MSQ9	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-0053106_34	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0053106_34	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0053106_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0053106_34	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0053106_37	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0053106_37	UniRef90	UniRef90_A0A116LLJ3	NA	NA
UHGV-0053106_37	eggNOG-mapper	1145276.T479_16305	NA	NA
UHGV-0053106_42	eggNOG-mapper	1235798.C817_04576	NA	NA
UHGV-0053106_43	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0053106_43	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0053106_43	UniRef90	UniRef90_A0A0E1KQR8	Methyltransferase	NA
UHGV-0053106_43	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0053106_43	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0053106_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0053106_43	COG	COG0863	DNA modification methylase	NA
UHGV-0053106_43	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0053106_44	Structural annotation	PF07011, MF_00683, NF041454	NA	NA
UHGV-0053106_45	PHROG	phrog_24658	NA	unknown function
UHGV-0053106_47	PHROG	phrog_1934	NA	unknown function
UHGV-0053106_47	UniRef90	UniRef90_UPI0005603695	zinc-finger-containing protein	NA
UHGV-0053106_47	eggNOG-mapper	445972.ANACOL_00149	COG NOG19595 non supervised orthologous group	NA
UHGV-0053106_47	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0053106_47	Structural annotation	PF11672	NA	NA
UHGV-0053106_50	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0053106_50	eggNOG-mapper	552398.HMPREF0866_01622	NA	NA
UHGV-0053106_50	Structural annotation	PF02185	NA	NA
UHGV-0053106_51	PHROG	phrog_4973	NA	unknown function
UHGV-0053106_51	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0053106_51	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0053106_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0053106_52	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0053106_52	Pfam	PF05772	NinB protein	NinB
UHGV-0053106_52	Structural annotation	PF05772	NA	NA
UHGV-0053106_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053106_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053106_53	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-0053106_53	eggNOG-mapper	1071073.KI530534_gene778	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0053106_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053106_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053106_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053106_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053106_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0053106_55	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053106_55	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-0053106_55	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0053106_55	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0053106_55	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0053106_56	PHROG	phrog_6244	NA	unknown function
UHGV-0053106_56	Structural annotation	PF05565	NA	NA
UHGV-0053106_59	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053106_59	UniRef90	UniRef90_UPI001C38C3AC	conserved phage C-terminal domain-containing protein	NA
UHGV-0053106_59	eggNOG-mapper	469604.HMPREF0946_00822	Transcriptional regulator	NA
UHGV-0053106_59	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0053106_59	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0053106_59	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0053106_59	Structural annotation	PF09524, PF19808, TIGR02220	NA	NA
UHGV-0053106_63	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053106_63	UniRef90	UniRef90_UPI001F202BC0	helix-turn-helix domain-containing protein	NA
UHGV-0053106_63	eggNOG-mapper	1234679.BN424_3330	Helix-turn-helix XRE-family like proteins	NA
UHGV-0053106_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053106_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053106_63	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053106_64	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053106_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053106_64	UniRef90	UniRef90_A0A0J8GH67	Prophage repressor protein	NA
UHGV-0053106_64	eggNOG-mapper	683837.lse_0121	Helix-turn-helix domain	NA
UHGV-0053106_64	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0053106_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053106_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053106_64	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA