UHGV-0053112

Genome information

Genome length 38,238 bps

CDS count 62

Completeness 91.41% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053112
vOTU ID	vOTU-063204
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_45100
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.05
Jumbo phage	No

Genome content
Genome length	38,238 bps
GC content	38.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.20%
Average CDS length	552.92 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053112_2	KOfam	K14059	int; integrase	NA
UHGV-0053112_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0053112_2	UniRef90	UniRef90_A0A6L6L8L1	Tyrosine-type recombinase/integrase	NA
UHGV-0053112_2	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0053112_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0053112_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053112_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053112_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0053112_3	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0053112_3	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053112_3	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0053112_3	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0053112_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053112_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053112_3	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0053112_4	PHROG	phrog_87	metallo-protease	other
UHGV-0053112_4	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053112_4	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0053112_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053112_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053112_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053112_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0053112_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053112_5	UniRef90	UniRef90_A0A844DZ87	Helix-turn-helix domain-containing protein	NA
UHGV-0053112_5	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0053112_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053112_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053112_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0053112_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053112_6	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-0053112_6	eggNOG-mapper	762051.LKI_09500	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators	NA
UHGV-0053112_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053112_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053112_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0053112_7	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0053112_8	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0053112_8	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0053112_9	Structural annotation	PF11127	NA	NA
UHGV-0053112_12	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0053112_14	PHROG	phrog_14970	NA	unknown function
UHGV-0053112_14	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0053112_14	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0053112_14	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0053112_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0053112_15	PHROG	phrog_398	NA	unknown function
UHGV-0053112_15	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0053112_15	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0053112_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0053112_15	Structural annotation	PF16784	NA	NA
UHGV-0053112_16	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0053112_16	UniRef90	UniRef90_A0A1Q6KI77	ORF6C domain-containing protein	NA
UHGV-0053112_16	eggNOG-mapper	428127.EUBDOL_01529	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0053112_16	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0053112_16	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0053112_16	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0053112_16	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0053112_16	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0053112_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0053112_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053112_17	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0053112_17	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0053112_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0053112_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0053112_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0053112_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0053112_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053112_18	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0053112_18	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0053112_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0053112_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0053112_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0053112_22	PHROG	phrog_10455	NA	unknown function
UHGV-0053112_22	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0053112_23	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0053112_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053112_24	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0053112_25	PHROG	phrog_8684	NA	unknown function
UHGV-0053112_25	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0053112_25	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0053112_25	Pfam	PF09643	YopX protein	YopX
UHGV-0053112_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0053112_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0053112_26	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0053112_26	eggNOG-mapper	1235793.C809_01910	NA	NA
UHGV-0053112_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053112_27	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0053112_27	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0053112_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0053112_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0053112_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0053112_28	PHROG	phrog_20593	NA	unknown function
UHGV-0053112_29	PHROG	phrog_874	NA	unknown function
UHGV-0053112_29	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0053112_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0053112_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0053112_32	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0053112_32	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0053112_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0053112_32	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0053112_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0053112_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0053112_33	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0053112_33	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0053112_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0053112_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0053112_33	COG	COG0863	DNA modification methylase	NA
UHGV-0053112_33	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0053112_34	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0053112_34	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0053112_34	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-0053112_34	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0053112_34	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0053112_34	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0053112_34	COG	COG0338	DNA-adenine methylase	NA
UHGV-0053112_34	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0053112_35	Structural annotation	PF13443, NF040507, COG1476	NA	NA
UHGV-0053112_36	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0053112_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0053112_42	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0053112_42	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0053112_42	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0053112_42	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0053112_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0053112_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0053112_42	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0053112_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053112_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0053112_43	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0053112_43	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0053112_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0053112_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053112_43	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0053112_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0053112_44	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0053112_44	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0053112_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0053112_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0053112_45	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0053112_45	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0053112_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0053112_45	COG	COG2369	NA	NA
UHGV-0053112_45	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0053112_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053112_47	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0053112_47	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0053112_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053112_47	Structural annotation	PF06810	NA	NA
UHGV-0053112_48	PHROG	phrog_212	major head protein	head and packaging
UHGV-0053112_48	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0053112_48	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0053112_48	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0053112_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0053112_50	PHROG	phrog_3366	NA	unknown function
UHGV-0053112_50	Pfam	PF20536	NA	DUF6751
UHGV-0053112_50	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0053112_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0053112_51	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0053112_51	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0053112_51	Structural annotation	PF11114	NA	NA
UHGV-0053112_52	PHROG	phrog_3266	tail completion	connector
UHGV-0053112_52	Structural annotation	PF12691	NA	NA
UHGV-0053112_53	PHROG	phrog_3099	NA	unknown function
UHGV-0053112_53	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0053112_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0053112_54	Structural annotation	PF20378	NA	NA
UHGV-0053112_55	PHROG	phrog_706	NA	unknown function
UHGV-0053112_55	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0053112_55	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0053112_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0053112_55	Structural annotation	PF06854	NA	NA
UHGV-0053112_56	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0053112_56	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-0053112_56	COG	COG5412	Phage-related protein	NA
UHGV-0053112_56	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0053112_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053112_57	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0053112_57	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0053112_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0053112_57	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0053112_58	PHROG	phrog_538	minor tail protein	tail
UHGV-0053112_58	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0053112_58	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0053112_58	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0053112_58	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053112_59	PHROG	phrog_1220	head protein	head and packaging
UHGV-0053112_59	UniRef90	UniRef90_K8EHZ6	Phage structural domain protein	NA
UHGV-0053112_59	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0053112_59	Structural annotation	PF20747, PF07210, TIGR04134, COG2512	NA	NA
UHGV-0053112_60	PHROG	phrog_1863	NA	unknown function
UHGV-0053112_60	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0053112_61	PHROG	phrog_443	holin	lysis
UHGV-0053112_61	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0053112_61	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0053112_61	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0053112_61	Structural annotation	PF16945	NA	NA
UHGV-0053112_62	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0053112_62	PHROG	phrog_7	endolysin	lysis
UHGV-0053112_62	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0053112_62	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0053112_62	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0053112_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0053112_62	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0053112_62	HAMAP	MF_04110	Endolysin	NA
UHGV-0053112_62	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA