UHGV-0053134

Genome information

Genome length 18,355 bps

CDS count 34

Completeness 57.00% (medium-quality)

geNomad score 0.9593

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053134
vOTU ID	vOTU-025752
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64191
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9593
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.48
Jumbo phage	No

Genome content
Genome length	18,355 bps
GC content	57.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	85.85%
Average CDS length	468.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053134_1	KOfam	K12950	ctpC; manganese-transporting P-type ATPase C [EC:7.2.2.22]	NA
UHGV-0053134_1	PHROG	phrog_12316	ATPase	other
UHGV-0053134_1	UniRef90	UniRef90_UPI0018AA0D63	HAD-IC family P-type ATPase	NA
UHGV-0053134_1	eggNOG-mapper	742722.HMPREF9463_00467	heavy metal translocating P-type ATPase	NA
UHGV-0053134_1	Pfam	PF00702	haloacid dehalogenase-like hydrolase	Hydrolase
UHGV-0053134_1	NCBIFam	TIGR01494.1	HAD-IC family P-type ATPase	NA
UHGV-0053134_1	COG	COG2217	Cation-transporting P-type ATPase	NA
UHGV-0053134_3	UniRef90	UniRef90_A0A096KW94	PINc domain-containing protein	NA
UHGV-0053134_3	eggNOG-mapper	742722.HMPREF9463_00469	Toxic component of a toxin-antitoxin (TA) module. An RNase	NA
UHGV-0053134_3	Pfam	PF13470	PIN domain	PIN_3
UHGV-0053134_3	COG	COG1848	VapC family ribonuclease, toxin component of the VapBC toxin-antitoxin module, contains PIN domain	NA
UHGV-0053134_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0053134_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0053134_5	UniRef90	UniRef90_UPI0013A61849	recombinase family protein	NA
UHGV-0053134_5	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0053134_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0053134_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0053134_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0053134_5	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0053134_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053134_7	UniRef90	UniRef90_UPI001C3E806F	helix-turn-helix transcriptional regulator	NA
UHGV-0053134_7	eggNOG-mapper	700015.Corgl_1236	Helix-turn-helix	NA
UHGV-0053134_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053134_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053134_7	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0053134_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0053134_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0053134_8	UniRef90	UniRef90_A0A1Y4G4T6	HTH cro/C1-type domain-containing protein	NA
UHGV-0053134_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053134_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053134_8	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0053134_12	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0053134_15	PHROG	phrog_24189	NA	unknown function
UHGV-0053134_15	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0053134_15	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0053134_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0053134_15	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0053134_16	PHROG	phrog_24658	NA	unknown function
UHGV-0053134_16	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0053134_17	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0053134_17	UniRef90	UniRef90_UPI000550874E	NA	NA
UHGV-0053134_17	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0053134_17	Pfam	PF11753	NA	DUF3310
UHGV-0053134_20	KOfam	K14059	int; integrase	NA
UHGV-0053134_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0053134_20	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0053134_20	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0053134_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053134_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053134_20	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0053134_23	PHROG	phrog_21723	NA	unknown function
UHGV-0053134_23	UniRef90	UniRef90_A0A7K3KYW0	Integration host factor	NA
UHGV-0053134_23	eggNOG-mapper	1033730.CAHG01000016_gene599	integration host factor	NA
UHGV-0053134_23	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0053134_23	COG	COG0099	Ribosomal protein S13	NA
UHGV-0053134_23	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0053134_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053134_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053134_24	UniRef90	UniRef90_A0A1Y4GBS3	Single-stranded DNA-binding protein	NA
UHGV-0053134_24	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0053134_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053134_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053134_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053134_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053134_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0053134_25	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0053134_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0053134_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0053134_26	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0053134_26	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0053134_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0053134_26	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0053134_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0053134_26	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0053134_27	PHROG	phrog_1828	NA	unknown function
UHGV-0053134_27	eggNOG-mapper	1304866.K413DRAFT_4633	NA	NA
UHGV-0053134_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053134_28	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0053134_28	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0053134_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0053134_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053134_29	UniRef90	UniRef90_R7D851	HNH endonuclease domain protein	NA
UHGV-0053134_29	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0053134_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053134_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053134_30	PHROG	phrog_1066	NA	unknown function
UHGV-0053134_30	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0053134_30	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0053134_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053134_31	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-0053134_31	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0053134_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053134_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053134_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053134_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0053134_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053134_32	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0053134_32	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0053134_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053134_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053134_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053134_33	KOfam	K06904	NA	NA
UHGV-0053134_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0053134_33	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-0053134_33	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0053134_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0053134_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0053134_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0053134_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0053134_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA