UHGV-0053173

Genome information

Genome length 40,482 bps

CDS count 44

Completeness 100.00% (complete)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053173
vOTU ID	vOTU-044971
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_44186
BioSample	SAMEA1970858
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.96
Jumbo phage	No

Genome content
Genome length	40,482 bps
GC content	47.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.88%
Average CDS length	887.66 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053173_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0053173_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0053173_1	UniRef90	UniRef90_A0A3D4S739	Recombinase family protein	NA
UHGV-0053173_1	eggNOG-mapper	657322.FPR_03320	NA	NA
UHGV-0053173_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0053173_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0053173_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0053173_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0053173_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0053173_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0053173_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053173_3	UniRef90	UniRef90_UPI001C3B6466	Helix-turn-helix domain-containing protein	NA
UHGV-0053173_3	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0053173_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053173_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053173_3	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0053173_4	UniRef90	UniRef90_L7VHB2	HTH cro/C1-type domain-containing protein	NA
UHGV-0053173_4	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0053173_4	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0053173_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0053173_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053173_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053173_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053173_8	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053173_8	UniRef90	UniRef90_A0A6M3JN22	Putative PD-(D/E)XK nuclease superfamily protein	NA
UHGV-0053173_8	eggNOG-mapper	1171373.PACID_15720	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0053173_8	COG	COG2887	RecB family exonuclease	NA
UHGV-0053173_8	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0053173_9	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053173_9	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0053173_9	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0053173_9	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0053173_10	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0053173_10	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0053173_10	Pfam	PF05772	NinB protein	NinB
UHGV-0053173_10	Structural annotation	PF05772	NA	NA
UHGV-0053173_11	PHROG	phrog_7566	NA	unknown function
UHGV-0053173_11	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0053173_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053173_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053173_13	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-0053173_13	eggNOG-mapper	1341151.ASZU01000008_gene1367	Single-strand binding protein family	NA
UHGV-0053173_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053173_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053173_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053173_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053173_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0053173_14	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053173_14	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-0053173_14	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0053173_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0053173_14	Structural annotation	TIGR01714	NA	NA
UHGV-0053173_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0053173_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053173_15	UniRef90	UniRef90_F7V9D6	Putative DnaC	NA
UHGV-0053173_15	eggNOG-mapper	1399942.U3PBJ1_9CAUD	IstB-like ATP binding protein	NA
UHGV-0053173_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0053173_15	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0053173_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0053173_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0053173_16	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053173_16	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0053173_16	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0053173_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0053173_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053173_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0053173_16	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0053173_17	PHROG	phrog_23660	NA	unknown function
UHGV-0053173_17	eggNOG-mapper	1226322.HMPREF1545_03534	NA	NA
UHGV-0053173_18	PHROG	phrog_5984	NA	unknown function
UHGV-0053173_18	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0053173_18	Structural annotation	PF19561	NA	NA
UHGV-0053173_22	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053173_22	UniRef90	UniRef90_A0A5E5PDL1	NA	NA
UHGV-0053173_22	eggNOG-mapper	393305.YE0860	NA	NA
UHGV-0053173_22	Pfam	PF12961	NA	DUF3850
UHGV-0053173_24	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0053173_25	PHROG	phrog_774	NA	unknown function
UHGV-0053173_25	Structural annotation	PF10458	NA	NA
UHGV-0053173_26	UniRef90	UniRef90_UPI000B34C540	helix-turn-helix domain-containing protein	NA
UHGV-0053173_27	PHROG	phrog_24361	terminase	head and packaging
UHGV-0053173_27	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-0053173_27	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0053173_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053173_27	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0053173_29	PHROG	phrog_156	portal protein	head and packaging
UHGV-0053173_29	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0053173_29	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0053173_29	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0053173_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-0053173_31	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0053173_31	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0053173_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0053173_33	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0053173_33	Structural annotation	PF20387	NA	NA
UHGV-0053173_34	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0053173_34	eggNOG-mapper	1408437.JNJN01000002_gene1390	NA	NA
UHGV-0053173_34	Structural annotation	PF11134, MF_01282, TIGR03300, COG2319	NA	NA
UHGV-0053173_35	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0053173_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0053173_36	PHROG	phrog_5302	tail protein	tail
UHGV-0053173_36	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0053173_36	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-0053173_36	Structural annotation	COG1262	NA	NA
UHGV-0053173_37	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0053173_37	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0053173_37	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-0053173_37	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0053173_37	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0053173_37	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0053173_37	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0053173_44	PHROG	phrog_22978	NA	unknown function
UHGV-0053173_44	UniRef90	UniRef90_E2ZIB5	Putative septum site-determining protein MinC	NA
UHGV-0053173_44	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0053173_44	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0053173_44	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal