UHGV-0053211

Genome information

Genome length 32,386 bps

CDS count 47

Completeness 92.10% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053211
vOTU ID	vOTU-073637
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63641
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.68
Jumbo phage	No

Genome content
Genome length	32,386 bps
GC content	37.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.35%
Average CDS length	654.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053211_1	UniRef90	UniRef90_A0A415T7X6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053211_1	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0053211_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053211_4	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0053211_4	eggNOG-mapper	397290.C810_01334	NA	NA
UHGV-0053211_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053211_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053211_6	PHROG	phrog_435	endolysin	lysis
UHGV-0053211_6	UniRef90	UniRef90_UPI00195E9D55	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053211_6	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0053211_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0053211_6	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0053211_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053211_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0053211_7	PHROG	phrog_18218	NA	unknown function
UHGV-0053211_7	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0053211_7	eggNOG-mapper	742740.HMPREF9474_03173	NA	NA
UHGV-0053211_7	Structural annotation	PF06946	NA	NA
UHGV-0053211_8	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-0053211_8	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-0053211_9	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0053211_9	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0053211_10	PHROG	phrog_13289	tail protein	tail
UHGV-0053211_10	UniRef90	UniRef90_A0A8G1TKQ2	Prophage_tail domain-containing protein	NA
UHGV-0053211_10	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0053211_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0053211_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0053211_10	COG	COG4926	Phage-related protein	NA
UHGV-0053211_10	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0053211_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053211_11	UniRef90	UniRef90_UPI00189728CA	phage tail family protein	NA
UHGV-0053211_11	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0053211_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0053211_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0053211_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0053211_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0053211_12	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0053211_12	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0053211_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0053211_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0053211_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0053211_15	PHROG	phrog_88	major tail protein	tail
UHGV-0053211_15	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0053211_15	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0053211_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0053211_15	COG	COG5492	NA	NA
UHGV-0053211_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0053211_16	PHROG	phrog_78	tail terminator	connector
UHGV-0053211_16	UniRef90	UniRef90_UPI001BB8C064	Phage tail protein	NA
UHGV-0053211_16	eggNOG-mapper	1227360.C176_12438	NA	NA
UHGV-0053211_16	Structural annotation	PF05657	NA	NA
UHGV-0053211_17	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0053211_17	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0053211_17	Structural annotation	TIGR01725	NA	NA
UHGV-0053211_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0053211_18	UniRef90	UniRef90_A0A371ATA0	Head-tail adaptor protein	NA
UHGV-0053211_18	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0053211_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0053211_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0053211_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053211_19	UniRef90	UniRef90_UPI001BA8BAD6	head-tail connector protein	NA
UHGV-0053211_19	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0053211_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0053211_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0053211_20	Structural annotation	PF01281	NA	NA
UHGV-0053211_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053211_21	UniRef90	UniRef90_A0A2G3DYR4	Phage major capsid protein	NA
UHGV-0053211_21	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0053211_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053211_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053211_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053211_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053211_22	KOfam	K06904	NA	NA
UHGV-0053211_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0053211_22	UniRef90	UniRef90_UPI001BAAB6D6	HK97 family phage prohead protease	NA
UHGV-0053211_22	eggNOG-mapper	903814.ELI_1298	Phage prohead protease, HK97 family	NA
UHGV-0053211_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0053211_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0053211_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0053211_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053211_23	UniRef90	UniRef90_A0A1U7M531	Phage portal protein	NA
UHGV-0053211_23	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0053211_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053211_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0053211_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053211_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0053211_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053211_24	UniRef90	UniRef90_A0A3R6HK66	Terminase	NA
UHGV-0053211_24	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0053211_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053211_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053211_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053211_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0053211_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0053211_25	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0053211_25	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0053211_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0053211_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0053211_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053211_26	UniRef90	UniRef90_A0A416UC55	HNH endonuclease	NA
UHGV-0053211_26	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0053211_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053211_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053211_27	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0053211_27	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0053211_27	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0053211_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0053211_27	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0053211_28	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0053211_28	UniRef90	UniRef90_A0A7M2RZV3	NA	NA
UHGV-0053211_28	eggNOG-mapper	887929.HMP0721_1274	NA	NA
UHGV-0053211_28	Pfam	PF14359	NA	DUF4406
UHGV-0053211_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0053211_29	UniRef90	UniRef90_UPI001A5AAE47	HNH endonuclease	NA
UHGV-0053211_29	eggNOG-mapper	431943.CKL_0801	HNH nucleases	NA
UHGV-0053211_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053211_29	Structural annotation	COG5126	NA	NA
UHGV-0053211_31	COG	COG0328	Ribonuclease HI	NA
UHGV-0053211_32	UniRef90	UniRef90_A0A318KPR7	Type I restriction modification DNA specificity protein	NA
UHGV-0053211_32	eggNOG-mapper	706434.HMPREF9429_00532	NA	NA
UHGV-0053211_32	PADLOC	Specificity_I_00127	Type I specificity subunit	RM
UHGV-0053211_32	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0053211_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0053211_33	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0053211_33	UniRef90	UniRef90_A0A1C6CVT8	Probable type I restriction enzyme BthVORF4518P M protein	NA
UHGV-0053211_33	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0053211_33	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0053211_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0053211_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0053211_33	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0053211_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053211_36	UniRef90	UniRef90_A0A3R6D179	Restriction alleviation protein, Lar family	NA
UHGV-0053211_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0053211_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0053211_36	Structural annotation	TIGR03655	NA	NA
UHGV-0053211_38	PHROG	phrog_98	NA	unknown function
UHGV-0053211_38	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-0053211_38	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0053211_38	Pfam	PF09643	YopX protein	YopX
UHGV-0053211_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0053211_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0053211_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053211_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053211_40	UniRef90	UniRef90_A0A1C6JG26	Single-stranded DNA-binding protein	NA
UHGV-0053211_40	eggNOG-mapper	1408312.JNJS01000006_gene836	Single-strand binding protein family	NA
UHGV-0053211_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053211_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053211_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053211_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053211_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0053211_41	PHROG	phrog_15982	NA	unknown function
UHGV-0053211_41	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0053211_41	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0053211_41	Pfam	PF12961	NA	DUF3850
UHGV-0053211_41	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0053211_42	PHROG	phrog_8470	NA	unknown function
UHGV-0053211_42	UniRef90	UniRef90_UPI00164CA24C	PcfJ domain-containing protein	NA
UHGV-0053211_42	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0053211_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0053211_42	Structural annotation	PF14284	NA	NA
UHGV-0053211_43	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0053211_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053211_44	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0053211_44	Structural annotation	PF11726	NA	NA
UHGV-0053211_46	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0053211_46	PHROG	phrog_32437	NA	unknown function
UHGV-0053211_46	UniRef90	UniRef90_A0A1M6B783	Transglycosylase SLT domain-containing protein	NA
UHGV-0053211_46	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-0053211_46	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0053211_46	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0053211_46	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0053211_47	UniRef90	UniRef90_UPI001594B79E	helix-turn-helix domain-containing protein	NA
UHGV-0053211_47	eggNOG-mapper	476272.RUMHYD_02830	Helix-turn-helix domain	NA
UHGV-0053211_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0053211_47	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA