UHGV-0053246

Genome information

Genome length 36,990 bps

CDS count 57

Completeness 57.83% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053246
vOTU ID	vOTU-040114
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_66711
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.98
Jumbo phage	No

Genome content
Genome length	36,990 bps
GC content	41.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.45%
Average CDS length	600.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053246_1	PHROG	phrog_14295	NA	unknown function
UHGV-0053246_1	eggNOG-mapper	762968.HMPREF9441_00568	NA	NA
UHGV-0053246_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0053246_2	PHROG	phrog_6305	tail protein	tail
UHGV-0053246_2	eggNOG-mapper	1235788.C802_00106	NA	NA
UHGV-0053246_2	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0053246_3	PHROG	phrog_15074	NA	unknown function
UHGV-0053246_3	eggNOG-mapper	470145.BACCOP_01120	Phage minor structural protein	NA
UHGV-0053246_3	COG	COG4926	Phage-related protein	NA
UHGV-0053246_3	Structural annotation	PF14594, PF20944, PF21567, TIGR01665, COG4379	NA	NA
UHGV-0053246_4	PHROG	phrog_19280	NA	unknown function
UHGV-0053246_4	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-0053246_4	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0053246_5	Structural annotation	PF17224	NA	NA
UHGV-0053246_6	eggNOG-mapper	411901.BACCAC_00321	NA	NA
UHGV-0053246_7	PHROG	phrog_19698	NA	unknown function
UHGV-0053246_7	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0053246_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053246_9	PHROG	phrog_435	endolysin	lysis
UHGV-0053246_9	UniRef90	UniRef90_A0A414Q7Y1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053246_9	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0053246_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0053246_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053246_9	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0053246_10	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-0053246_11	Structural annotation	PF13385, PF17994	NA	NA
UHGV-0053246_12	PHROG	phrog_26448	NA	unknown function
UHGV-0053246_12	eggNOG-mapper	449673.BACSTE_00850	NA	NA
UHGV-0053246_12	Pfam	PF20647	NA	DUF6808
UHGV-0053246_12	Structural annotation	PF20647	NA	NA
UHGV-0053246_14	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0053246_14	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0053246_14	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0053246_15	PHROG	phrog_16490	NA	unknown function
UHGV-0053246_15	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0053246_15	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-0053246_16	PHROG	phrog_31654	NA	unknown function
UHGV-0053246_16	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0053246_17	PHROG	phrog_28898	NA	unknown function
UHGV-0053246_17	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0053246_17	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0053246_17	Structural annotation	PF10781	NA	NA
UHGV-0053246_18	PHROG	phrog_34053	NA	unknown function
UHGV-0053246_19	PHROG	phrog_38431	NA	unknown function
UHGV-0053246_19	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0053246_19	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0053246_20	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0053246_20	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0053246_21	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0053246_21	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-0053246_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0053246_22	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0053246_22	Pfam	PF14359	NA	DUF4406
UHGV-0053246_23	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0053246_25	PHROG	phrog_22725	NA	unknown function
UHGV-0053246_25	eggNOG-mapper	397290.C810_01475	NA	NA
UHGV-0053246_26	PHROG	phrog_4245	NA	unknown function
UHGV-0053246_27	PHROG	phrog_12005	NA	unknown function
UHGV-0053246_31	Structural annotation	PF13783, MF_01054	NA	NA
UHGV-0053246_33	UniRef90	UniRef90_UPI0018A0CB0B	NA	NA
UHGV-0053246_33	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0053246_33	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0053246_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0053246_36	UniRef90	UniRef90_A0A1M5F6L6	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0053246_36	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0053246_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0053246_36	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0053246_37	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0053246_37	UniRef90	UniRef90_A0A380Z9Z8	Methyltransf_11 domain-containing protein	NA
UHGV-0053246_37	eggNOG-mapper	1121100.JCM6294_542	Methyltransferase domain	NA
UHGV-0053246_37	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0053246_37	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0053246_37	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0053246_37	Structural annotation	PF05175, MF_00835, TIGR01934, COG2226	NA	NA
UHGV-0053246_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0053246_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0053246_38	UniRef90	UniRef90_A0A4P6RLE5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053246_38	eggNOG-mapper	1122971.BAME01000058_gene4475	C-5 cytosine-specific DNA methylase	NA
UHGV-0053246_38	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0053246_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0053246_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0053246_38	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0053246_39	eggNOG-mapper	763034.HMPREF9446_02095	NA	NA
UHGV-0053246_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0053246_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0053246_40	UniRef90	UniRef90_A0A1Y3YRG2	DNA helicase	NA
UHGV-0053246_40	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0053246_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0053246_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0053246_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0053246_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0053246_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053246_41	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-0053246_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0053246_41	Structural annotation	PF04703, NF033788, COG1846	NA	NA
UHGV-0053246_43	PHROG	phrog_824	NA	unknown function
UHGV-0053246_43	UniRef90	UniRef90_A0A1Q6HQK2	VRR-NUC domain-containing protein	NA
UHGV-0053246_43	eggNOG-mapper	1122931.AUAE01000005_gene3274	VRR_NUC	NA
UHGV-0053246_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0053246_43	Structural annotation	PF08774	NA	NA
UHGV-0053246_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0053246_44	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0053246_44	UniRef90	UniRef90_UPI0018981759	phage antirepressor KilAC domain-containing protein	NA
UHGV-0053246_44	eggNOG-mapper	1127696.HMPREF9134_00474	Phage antirepressor protein KilAC domain	NA
UHGV-0053246_44	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0053246_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0053246_44	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0053246_44	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0053246_50	PHROG	phrog_19572	NA	unknown function
UHGV-0053246_50	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-0053246_50	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-0053246_50	Pfam	PF14902	NA	DUF4494
UHGV-0053246_50	Structural annotation	PF14902, COG2157	NA	NA
UHGV-0053246_51	PHROG	phrog_36980	NA	unknown function
UHGV-0053246_51	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-0053246_52	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053246_52	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-0053246_52	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0053246_52	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0053246_52	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-0053246_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0053246_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053246_53	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-0053246_53	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0053246_53	Pfam	PF03837	RecT family	RecT
UHGV-0053246_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0053246_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0053246_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0053246_54	PHROG	phrog_15773	NA	unknown function
UHGV-0053246_54	UniRef90	UniRef90_UPI001E50B81C	NA	NA
UHGV-0053246_56	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0053246_56	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0053246_56	UniRef90	UniRef90_A0A414Q846	N6_Mtase domain-containing protein	NA
UHGV-0053246_56	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0053246_56	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0053246_56	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0053246_56	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0053246_56	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA