UHGV-0053294

Genome information

Genome length 38,944 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053294
vOTU ID	vOTU-008943
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_60390
BioSample	SAMEA2338759
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.64
Jumbo phage	No

Genome content
Genome length	38,944 bps
GC content	28.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.94%
Average CDS length	510.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053294_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0053294_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0053294_2	UniRef90	UniRef90_R6Z152	DNA-binding protein	NA
UHGV-0053294_2	eggNOG-mapper	1038858.AXBA01000001_gene3370	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0053294_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0053294_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053294_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053294_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0053294_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053294_3	PHROG	phrog_3088	amidase	lysis
UHGV-0053294_3	UniRef90	UniRef90_A0A1Q6JUS1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0053294_3	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053294_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0053294_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0053294_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0053294_5	PHROG	phrog_15303	NA	unknown function
UHGV-0053294_6	eggNOG-mapper	33035.JPJF01000016_gene3956	Putative diguanylate phosphodiesterase	NA
UHGV-0053294_6	COG	COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	NA
UHGV-0053294_6	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-0053294_7	PHROG	phrog_2310	NA	unknown function
UHGV-0053294_7	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0053294_11	Structural annotation	PF07041	NA	NA
UHGV-0053294_12	PHROG	phrog_372	tail protein	tail
UHGV-0053294_12	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0053294_12	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0053294_12	Pfam	PF05895	NA	DUF859
UHGV-0053294_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0053294_12	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0053294_13	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0053294_13	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0053294_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0053294_15	PHROG	phrog_1194	NA	unknown function
UHGV-0053294_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0053294_16	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0053294_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0053294_16	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0053294_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0053294_16	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0053294_17	PHROG	phrog_10292	NA	unknown function
UHGV-0053294_17	UniRef90	UniRef90_R7IWE1	TM2 domain protein	NA
UHGV-0053294_17	eggNOG-mapper	1322246.BN4_11117	TM2 domain	NA
UHGV-0053294_17	Pfam	PF05154	TM2 domain	TM2
UHGV-0053294_17	COG	COG2314	NA	NA
UHGV-0053294_17	Structural annotation	PF05154, COG2314	NA	NA
UHGV-0053294_19	Structural annotation	PF12363	NA	NA
UHGV-0053294_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0053294_21	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0053294_21	Structural annotation	PF05657	NA	NA
UHGV-0053294_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0053294_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0053294_26	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0053294_26	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0053294_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0053294_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053294_26	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053294_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0053294_27	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0053294_27	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0053294_27	Pfam	PF14265	NA	DUF4355
UHGV-0053294_27	Structural annotation	PF14265	NA	NA
UHGV-0053294_29	UniRef90	UniRef90_A0A3A9BLS0	Phage_Mu_F domain-containing protein	NA
UHGV-0053294_29	eggNOG-mapper	97138.C820_01986	Phage Mu protein F like protein	NA
UHGV-0053294_29	COG	COG2369	NA	NA
UHGV-0053294_29	Structural annotation	TIGR01641	NA	NA
UHGV-0053294_30	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0053294_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053294_31	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0053294_31	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0053294_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053294_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0053294_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0053294_32	UniRef90	UniRef90_R7ITA5	Putative terminase large subunit	NA
UHGV-0053294_32	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-0053294_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0053294_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0053294_32	COG	COG5410	NA	NA
UHGV-0053294_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0053294_33	PHROG	phrog_2412	NA	unknown function
UHGV-0053294_33	UniRef90	UniRef90_A0A388TCF6	Phage-related protein	NA
UHGV-0053294_33	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-0053294_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0053294_34	UniRef90	UniRef90_UPI000CF2C653	NA	NA
UHGV-0053294_34	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0053294_34	Pfam	PF14359	NA	DUF4406
UHGV-0053294_34	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0053294_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0053294_42	Structural annotation	PF11506, MF_00720, NF004948, COG3390	NA	NA
UHGV-0053294_45	PHROG	phrog_20637	NA	unknown function
UHGV-0053294_45	UniRef90	UniRef90_A0A3D1YZZ1	Catalase	NA
UHGV-0053294_45	eggNOG-mapper	1410674.JNKU01000029_gene784	NA	NA
UHGV-0053294_45	Pfam	PF18907	NA	DUF5662
UHGV-0053294_45	Structural annotation	PF18907	NA	NA
UHGV-0053294_50	PHROG	phrog_4601	NA	unknown function
UHGV-0053294_52	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053294_52	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0053294_52	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0053294_54	PHROG	phrog_1123	NA	unknown function
UHGV-0053294_54	Structural annotation	PF10007, MF_01909, TIGR03433, COG1675	NA	NA
UHGV-0053294_55	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053294_55	UniRef90	UniRef90_A0A5C9BNW8	Cytoplasmic protein	NA
UHGV-0053294_55	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0053294_55	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0053294_57	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0053294_57	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0053294_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0053294_58	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-0053294_58	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0053294_58	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0053294_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0053294_58	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0053294_59	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053294_59	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0053294_59	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0053294_59	Pfam	PF03837	RecT family	RecT
UHGV-0053294_59	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0053294_59	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0053294_59	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0053294_60	PHROG	phrog_674	NA	unknown function
UHGV-0053294_60	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0053294_60	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0053294_60	Pfam	PF07083	NA	DUF1351
UHGV-0053294_60	Structural annotation	PF07083	NA	NA
UHGV-0053294_61	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0053294_61	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0053294_61	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0053294_61	eggNOG-mapper	1121468.AUBR01000004_gene159	TIGRFAM transcriptional regulator, AbrB family	NA
UHGV-0053294_61	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0053294_61	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0053294_61	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0053294_61	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0053294_65	PHROG	phrog_1090	NA	unknown function
UHGV-0053294_65	UniRef90	UniRef90_A0A1S1YCV1	CRISPR-associated protein Cas2	NA
UHGV-0053294_65	eggNOG-mapper	1034809.SLUG_08350	NA	NA
UHGV-0053294_65	Pfam	PF09827	CRISPR associated protein Cas2	CRISPR_Cas2
UHGV-0053294_65	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0053294_67	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053294_67	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0053294_67	UniRef90	UniRef90_A0A143ZAX3	HTH cro/C1-type domain-containing protein	NA
UHGV-0053294_67	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0053294_67	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0053294_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053294_67	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0053294_68	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0053294_68	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0053294_68	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0053294_68	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-0053294_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053294_68	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0053294_68	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0053294_68	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0053294_69	KOfam	K14059	int; integrase	NA
UHGV-0053294_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0053294_69	UniRef90	UniRef90_A0A0S6UFB5	Integrase	NA
UHGV-0053294_69	eggNOG-mapper	580331.Thit_1365	Belongs to the 'phage' integrase family	NA
UHGV-0053294_69	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0053294_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053294_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053294_69	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA