UHGV-0053319

Genome information

Genome length 38,348 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053319
vOTU ID	vOTU-014198
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55251
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.9
Jumbo phage	No

Genome content
Genome length	38,348 bps
GC content	59.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.38%
Average CDS length	552.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053319_1	KOfam	K19294	algI; alginate O-acetyltransferase complex protein AlgI	NA
UHGV-0053319_1	UniRef90	UniRef90_A0A645DYB1	Peptidoglycan O-acetyltransferase	NA
UHGV-0053319_1	eggNOG-mapper	748224.HMPREF9436_02030	NA	NA
UHGV-0053319_1	COG	COG1696	D-alanyl-lipoteichoic acid acyltransferase DltB, MBOAT superfamily	NA
UHGV-0053319_2	KOfam	K19295	algJ; alginate O-acetyltransferase complex protein AlgJ	NA
UHGV-0053319_2	eggNOG-mapper	748224.HMPREF9436_02031	SGNH hydrolase-like domain, acetyltransferase AlgX	NA
UHGV-0053319_3	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0053319_3	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0053319_3	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0053319_3	eggNOG-mapper	1121904.ARBP01000022_gene3496	Cellulose biosynthesis protein BcsQ	NA
UHGV-0053319_3	Pfam	PF13614	AAA domain	AAA_31
UHGV-0053319_3	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0053319_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0053319_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0053319_5	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0053319_5	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0053319_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0053319_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0053319_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0053319_5	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0053319_6	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053319_6	UniRef90	UniRef90_UPI000F632BBD	helix-turn-helix domain-containing protein	NA
UHGV-0053319_6	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0053319_6	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0053319_6	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0053319_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0053319_7	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0053319_7	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0053319_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0053319_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0053319_7	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0053319_8	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0053319_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053319_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053319_9	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0053319_9	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0053319_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053319_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053319_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053319_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0053319_10	UniRef90	UniRef90_A0A096AZX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0053319_10	eggNOG-mapper	742738.HMPREF9460_04038	sequence-specific DNA binding	NA
UHGV-0053319_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0053319_10	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0053319_12	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-0053319_12	eggNOG-mapper	1226322.HMPREF1545_01476	Copper amine oxidase N-terminal domain	NA
UHGV-0053319_12	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0053319_13	PHROG	phrog_17982	NA	unknown function
UHGV-0053319_13	UniRef90	UniRef90_UPI000C823954	NA	NA
UHGV-0053319_13	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0053319_13	Pfam	PF14020	NA	DUF4236
UHGV-0053319_13	Structural annotation	PF14020	NA	NA
UHGV-0053319_14	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0053319_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053319_14	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0053319_14	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0053319_15	KOfam	K14059	int; integrase	NA
UHGV-0053319_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0053319_15	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0053319_15	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0053319_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0053319_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053319_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053319_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0053319_16	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0053319_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0053319_22	PHROG	phrog_25567	NA	unknown function
UHGV-0053319_22	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0053319_22	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0053319_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053319_22	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0053319_23	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-0053319_23	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0053319_23	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0053319_24	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0053319_25	PHROG	phrog_21357	endolysin	lysis
UHGV-0053319_25	UniRef90	UniRef90_UPI001C00DA69	CHAP domain-containing protein	NA
UHGV-0053319_25	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0053319_25	Pfam	PF05257	CHAP domain	CHAP
UHGV-0053319_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0053319_25	Structural annotation	PF06672, TIGR02594, COG4322	NA	NA
UHGV-0053319_27	PHROG	phrog_13256	NA	unknown function
UHGV-0053319_27	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0053319_28	PHROG	phrog_1863	NA	unknown function
UHGV-0053319_28	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0053319_29	PHROG	phrog_1382	NA	unknown function
UHGV-0053319_29	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA
UHGV-0053319_31	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-0053319_31	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0053319_32	Structural annotation	PF00354	NA	NA
UHGV-0053319_33	PHROG	phrog_13879	NA	unknown function
UHGV-0053319_33	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0053319_33	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0053319_34	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0053319_34	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0053319_35	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0053319_35	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0053319_35	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0053319_35	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0053319_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0053319_36	Structural annotation	PF11836	NA	NA
UHGV-0053319_37	PHROG	phrog_88	major tail protein	tail
UHGV-0053319_37	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0053319_37	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0053319_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0053319_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0053319_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053319_38	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0053319_38	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0053319_38	Structural annotation	TIGR01725	NA	NA
UHGV-0053319_39	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0053319_39	eggNOG-mapper	1123075.AUDP01000020_gene1517	NA	NA
UHGV-0053319_39	Structural annotation	PF05657	NA	NA
UHGV-0053319_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0053319_40	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0053319_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0053319_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0053319_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0053319_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053319_41	UniRef90	UniRef90_UPI0010315EA4	phage gp6-like head-tail connector protein	NA
UHGV-0053319_41	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0053319_41	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0053319_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0053319_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053319_42	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0053319_42	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0053319_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053319_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053319_42	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053319_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0053319_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0053319_43	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0053319_43	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0053319_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0053319_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0053319_43	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0053319_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053319_44	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0053319_44	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0053319_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053319_44	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0053319_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053319_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053319_46	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053319_46	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0053319_46	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0053319_46	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053319_46	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053319_46	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053319_46	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0053319_47	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0053319_47	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0053319_47	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0053319_47	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0053319_47	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0053319_47	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0053319_47	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0053319_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0053319_48	PHROG	phrog_21498	NA	unknown function
UHGV-0053319_48	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0053319_48	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0053319_48	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0053319_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0053319_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0053319_48	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0053319_49	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053319_49	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0053319_49	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0053319_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053319_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053319_49	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0053319_50	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0053319_50	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0053319_50	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0053319_50	Structural annotation	PF14205	NA	NA
UHGV-0053319_51	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053319_51	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0053319_51	Structural annotation	PF05840	NA	NA
UHGV-0053319_55	PHROG	phrog_38832	NA	unknown function
UHGV-0053319_55	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0053319_57	Structural annotation	PF06657	NA	NA
UHGV-0053319_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053319_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053319_60	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0053319_60	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0053319_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053319_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053319_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053319_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053319_60	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0053319_63	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0053319_63	PHROG	phrog_27290	NA	unknown function
UHGV-0053319_63	UniRef90	UniRef90_UPI00195EFCA8	helix-turn-helix domain-containing protein	NA
UHGV-0053319_63	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0053319_63	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0053319_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053319_63	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0053319_63	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0053319_64	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0053319_64	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0053319_64	UniRef90	UniRef90_UPI001897ECF8	ParA family protein	NA
UHGV-0053319_64	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0053319_64	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0053319_64	Structural annotation	NF041546, COG2894	NA	NA