UHGV-0053397

Genome information

Genome length 40,875 bps

CDS count 61

Completeness 98.14% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053397
vOTU ID	vOTU-069863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31660
BioSample	SAMEA2151633
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.37
Jumbo phage	No

Genome content
Genome length	40,875 bps
GC content	39.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	88.63%
Average CDS length	596.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053397_1	KOfam	K19294	algI; alginate O-acetyltransferase complex protein AlgI	NA
UHGV-0053397_1	UniRef90	UniRef90_A0A174ESW8	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA
UHGV-0053397_1	eggNOG-mapper	622312.ROSEINA2194_02856	Membrane protein involved in D-alanine export	NA
UHGV-0053397_1	Pfam	PF03062	MBOAT, membrane-bound O-acyltransferase family	MBOAT
UHGV-0053397_1	COG	COG1696	D-alanyl-lipoteichoic acid acyltransferase DltB, MBOAT superfamily	NA
UHGV-0053397_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0053397_2	PHROG	phrog_7	endolysin	lysis
UHGV-0053397_2	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0053397_2	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0053397_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0053397_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0053397_2	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0053397_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0053397_2	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0053397_3	PHROG	phrog_443	holin	lysis
UHGV-0053397_3	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0053397_3	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0053397_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0053397_3	Structural annotation	PF16945	NA	NA
UHGV-0053397_4	PHROG	phrog_1863	NA	unknown function
UHGV-0053397_4	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0053397_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-0053397_5	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0053397_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0053397_6	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0053397_6	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0053397_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0053397_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053397_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053397_7	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0053397_7	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0053397_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0053397_7	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0053397_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0053397_8	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0053397_8	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0053397_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0053397_9	PHROG	phrog_706	NA	unknown function
UHGV-0053397_9	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0053397_9	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0053397_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0053397_9	Structural annotation	PF06854	NA	NA
UHGV-0053397_10	Structural annotation	PF20378	NA	NA
UHGV-0053397_11	PHROG	phrog_3099	NA	unknown function
UHGV-0053397_11	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0053397_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0053397_12	PHROG	phrog_3266	tail completion	connector
UHGV-0053397_12	Structural annotation	PF12691	NA	NA
UHGV-0053397_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0053397_13	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0053397_13	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0053397_13	Structural annotation	PF11114	NA	NA
UHGV-0053397_14	PHROG	phrog_3366	NA	unknown function
UHGV-0053397_14	Pfam	PF20536	NA	DUF6751
UHGV-0053397_14	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0053397_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0053397_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0053397_16	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0053397_16	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0053397_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0053397_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053397_17	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0053397_17	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0053397_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053397_17	Structural annotation	PF06810	NA	NA
UHGV-0053397_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0053397_19	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0053397_19	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0053397_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0053397_19	COG	COG2369	NA	NA
UHGV-0053397_19	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0053397_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0053397_20	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0053397_20	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0053397_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0053397_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053397_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0053397_21	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0053397_21	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0053397_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0053397_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053397_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0053397_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0053397_22	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0053397_22	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0053397_22	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0053397_22	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0053397_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0053397_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0053397_22	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0053397_23	eggNOG-mapper	483218.BACPEC_01222	NA	NA
UHGV-0053397_24	PHROG	phrog_23933	NA	unknown function
UHGV-0053397_24	UniRef90	UniRef90_R7JBB8	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA
UHGV-0053397_24	eggNOG-mapper	1415775.U729_2603	NA	NA
UHGV-0053397_24	Structural annotation	PF00211, NF033576, COG2114	NA	NA
UHGV-0053397_27	eggNOG-mapper	1117958.PE143B_0129235	NA	NA
UHGV-0053397_29	Structural annotation	PF18358	NA	NA
UHGV-0053397_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0053397_30	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0053397_30	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0053397_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0053397_30	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0053397_33	PHROG	phrog_874	NA	unknown function
UHGV-0053397_33	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0053397_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0053397_33	Pfam	PF04266	ASCH domain	ASCH
UHGV-0053397_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0053397_34	PHROG	phrog_20593	NA	unknown function
UHGV-0053397_35	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053397_35	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0053397_35	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0053397_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0053397_35	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0053397_35	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0053397_36	Structural annotation	PF14282	NA	NA
UHGV-0053397_37	PHROG	phrog_8684	NA	unknown function
UHGV-0053397_37	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0053397_37	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0053397_37	Pfam	PF09643	YopX protein	YopX
UHGV-0053397_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0053397_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0053397_38	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0053397_39	PHROG	phrog_37916	NA	unknown function
UHGV-0053397_40	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0053397_40	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0053397_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0053397_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053397_44	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0053397_44	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0053397_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0053397_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0053397_44	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0053397_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053397_45	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0053397_45	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0053397_45	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0053397_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0053397_46	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053397_46	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0053397_46	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0053397_46	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0053397_47	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0053397_47	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-0053397_47	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0053397_47	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0053397_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0053397_47	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0053397_47	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0053397_47	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0053397_48	PHROG	phrog_7566	NA	unknown function
UHGV-0053397_48	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0053397_48	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0053397_49	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053397_49	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0053397_49	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0053397_49	Pfam	PF12684	NA	DUF3799
UHGV-0053397_49	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0053397_49	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0053397_50	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053397_50	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0053397_50	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0053397_50	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0053397_51	PHROG	phrog_1499	NA	unknown function
UHGV-0053397_51	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0053397_51	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0053397_51	PADLOC	AAA_15	NA	NA
UHGV-0053397_51	Pfam	PF13476	AAA domain	AAA_23
UHGV-0053397_51	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0053397_51	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0053397_52	Structural annotation	PF11127	NA	NA
UHGV-0053397_53	PHROG	phrog_6058	NA	unknown function
UHGV-0053397_57	UniRef90	UniRef90_A0A3R5WA69	DNA-binding protein	NA
UHGV-0053397_57	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0053397_57	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0053397_57	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0053397_57	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0053397_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053397_58	UniRef90	UniRef90_A0A414RMQ9	XRE family transcriptional regulator	NA
UHGV-0053397_58	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0053397_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053397_58	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0053397_58	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0053397_59	PHROG	phrog_87	metallo-protease	other
UHGV-0053397_59	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053397_59	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0053397_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053397_59	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053397_59	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053397_60	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0053397_60	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053397_60	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0053397_60	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0053397_60	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053397_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053397_60	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0053397_61	KOfam	K14059	int; integrase	NA
UHGV-0053397_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0053397_61	UniRef90	UniRef90_A0A412FH29	Integrase	NA
UHGV-0053397_61	eggNOG-mapper	397288.C806_00112	Belongs to the 'phage' integrase family	NA
UHGV-0053397_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053397_61	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA