UHGV-0053439

Genome information

Genome length 38,159 bps

CDS count 63

Completeness 84.78% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053439
vOTU ID	vOTU-034873
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_49126
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.06
Jumbo phage	No

Genome content
Genome length	38,159 bps
GC content	38.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.18%
Average CDS length	550.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053439_1	PHROG	phrog_87	metallo-protease	other
UHGV-0053439_1	UniRef90	UniRef90_UPI000E4A4CF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053439_1	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0053439_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053439_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053439_2	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0053439_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053439_2	UniRef90	UniRef90_A0A174PA31	Predicted transcriptional regulator	NA
UHGV-0053439_2	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0053439_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0053439_2	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0053439_3	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-0053439_3	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0053439_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053439_4	PHROG	phrog_6058	NA	unknown function
UHGV-0053439_5	Structural annotation	PF11127	NA	NA
UHGV-0053439_8	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0053439_10	PHROG	phrog_674	NA	unknown function
UHGV-0053439_10	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0053439_10	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0053439_10	Pfam	PF07083	NA	DUF1351
UHGV-0053439_10	Structural annotation	PF07083	NA	NA
UHGV-0053439_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053439_11	UniRef90	UniRef90_A0A412KFC1	Single-stranded DNA-binding protein	NA
UHGV-0053439_11	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0053439_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0053439_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053439_11	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0053439_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0053439_12	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0053439_13	PHROG	phrog_7566	NA	unknown function
UHGV-0053439_13	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0053439_13	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0053439_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0053439_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053439_15	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0053439_15	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0053439_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0053439_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0053439_15	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0053439_16	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053439_16	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0053439_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0053439_16	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0053439_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0053439_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053439_17	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0053439_17	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0053439_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0053439_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0053439_17	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0053439_20	PHROG	phrog_10455	NA	unknown function
UHGV-0053439_20	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0053439_22	PHROG	phrog_7711	NA	unknown function
UHGV-0053439_22	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-0053439_22	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0053439_23	PHROG	phrog_8684	NA	unknown function
UHGV-0053439_23	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0053439_23	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0053439_23	Pfam	PF09643	YopX protein	YopX
UHGV-0053439_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0053439_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0053439_24	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0053439_25	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053439_25	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0053439_25	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0053439_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0053439_25	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0053439_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0053439_26	PHROG	phrog_20593	NA	unknown function
UHGV-0053439_27	PHROG	phrog_874	NA	unknown function
UHGV-0053439_27	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0053439_27	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0053439_27	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0053439_28	PHROG	phrog_13489	NA	unknown function
UHGV-0053439_28	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0053439_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0053439_30	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0053439_30	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0053439_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0053439_30	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0053439_31	Structural annotation	PF18358	NA	NA
UHGV-0053439_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0053439_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0053439_35	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-0053439_35	eggNOG-mapper	1188240.MYEA_5710	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0053439_35	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0053439_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053439_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0053439_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0053439_36	UniRef90	UniRef90_A0A3R6DFA9	ABC transporter ATP-binding protein	NA
UHGV-0053439_37	eggNOG-mapper	97139.C824_04735	NA	NA
UHGV-0053439_37	Pfam	PF18863	AbiJ N-terminal domain 4	AbiJ_NTD4
UHGV-0053439_37	Structural annotation	PF18863, PF05168, COG1895	NA	NA
UHGV-0053439_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053439_38	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0053439_38	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0053439_38	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0053439_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0053439_39	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0053439_39	UniRef90	UniRef90_A0A413SPG6	Phage portal protein	NA
UHGV-0053439_39	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0053439_39	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0053439_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0053439_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0053439_39	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0053439_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053439_40	PHROG	phrog_10250	NA	unknown function
UHGV-0053439_40	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-0053439_40	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0053439_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0053439_40	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0053439_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0053439_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053439_40	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0053439_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053439_41	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-0053439_41	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0053439_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053439_41	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0053439_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0053439_42	PHROG	phrog_1233	NA	unknown function
UHGV-0053439_42	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0053439_42	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0053439_43	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0053439_43	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0053439_43	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0053439_43	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0053439_43	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0053439_43	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0053439_43	COG	COG2369	NA	NA
UHGV-0053439_43	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0053439_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053439_44	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0053439_44	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-0053439_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053439_44	Structural annotation	PF06810	NA	NA
UHGV-0053439_45	PHROG	phrog_247	major head protein	head and packaging
UHGV-0053439_45	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0053439_45	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0053439_45	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0053439_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0053439_46	UniRef90	UniRef90_UPI001C012CC6	phage head-tail connector protein	NA
UHGV-0053439_46	eggNOG-mapper	445335.CBN_1380	Phage gp6-like head-tail connector protein	NA
UHGV-0053439_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0053439_46	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0053439_47	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0053439_47	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0053439_47	eggNOG-mapper	1029718.SFBM_0124	NA	NA
UHGV-0053439_47	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0053439_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053439_48	UniRef90	UniRef90_UPI000BB864CF	HK97 gp10 family phage protein	NA
UHGV-0053439_48	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0053439_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053439_48	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0053439_49	PHROG	phrog_525	NA	unknown function
UHGV-0053439_49	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0053439_49	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-0053439_49	Pfam	PF20765	NA	DUF6838
UHGV-0053439_49	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0053439_50	PHROG	phrog_966	NA	unknown function
UHGV-0053439_51	PHROG	phrog_279	tail sheath	tail
UHGV-0053439_51	UniRef90	UniRef90_A0A354CP34	Phage tail protein	NA
UHGV-0053439_51	eggNOG-mapper	1235793.C809_01940	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0053439_51	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0053439_51	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0053439_51	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0053439_51	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0053439_52	PHROG	phrog_365	tail protein	tail
UHGV-0053439_52	UniRef90	UniRef90_UPI001C02900F	phage tail tube protein	NA
UHGV-0053439_52	eggNOG-mapper	742740.HMPREF9474_02346	Phage tail tube protein	NA
UHGV-0053439_52	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0053439_52	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0053439_53	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0053439_53	UniRef90	UniRef90_A9KPN9	XkdN-like protein	NA
UHGV-0053439_53	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0053439_53	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0053439_53	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0053439_54	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0053439_54	UniRef90	UniRef90_A0A173SDK0	Phage-related minor tail protein	NA
UHGV-0053439_54	eggNOG-mapper	608534.GCWU000341_02282	tape measure	NA
UHGV-0053439_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0053439_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0053439_54	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0053439_54	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0053439_55	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0053439_55	PHROG	phrog_380	endolysin	lysis
UHGV-0053439_55	UniRef90	UniRef90_A0A1Q6K9H2	Peptidoglycan-binding protein LysM	NA
UHGV-0053439_55	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0053439_55	Pfam	PF01476	LysM domain	LysM
UHGV-0053439_55	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0053439_55	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0053439_56	PHROG	phrog_400	tail protein	tail
UHGV-0053439_56	UniRef90	UniRef90_A0A1Q6K979	Hydrolase	NA
UHGV-0053439_56	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0053439_56	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0053439_56	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0053439_57	PHROG	phrog_579	NA	unknown function
UHGV-0053439_57	UniRef90	UniRef90_UPI001F4E5AB6	NA	NA
UHGV-0053439_57	eggNOG-mapper	1347368.HG964405_gene5701	NA	NA
UHGV-0053439_57	Pfam	PF10844	NA	DUF2577
UHGV-0053439_57	Structural annotation	PF10844	NA	NA
UHGV-0053439_58	PHROG	phrog_120	baseplate protein	tail
UHGV-0053439_58	UniRef90	UniRef90_A0A415TAC7	NA	NA
UHGV-0053439_58	eggNOG-mapper	397288.C806_00119	NA	NA
UHGV-0053439_58	Pfam	PF10934	NA	DUF2634
UHGV-0053439_58	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0053439_58	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0053439_59	PHROG	phrog_6	baseplate protein	tail
UHGV-0053439_59	UniRef90	UniRef90_A0A354CNF6	Phage tail protein	NA
UHGV-0053439_59	eggNOG-mapper	1195236.CTER_3989	Baseplate J-like protein	NA
UHGV-0053439_59	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0053439_59	COG	COG3299	NA	NA
UHGV-0053439_59	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0053439_60	PHROG	phrog_521	tail protein	tail
UHGV-0053439_60	UniRef90	UniRef90_UPI0010303FE2	NA	NA
UHGV-0053439_60	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0053439_60	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0053439_60	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0053439_60	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0053439_61	PHROG	phrog_381	tail fiber protein	tail
UHGV-0053439_61	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0053439_62	PHROG	phrog_1863	NA	unknown function
UHGV-0053439_62	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0053439_63	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0053439_63	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0053439_63	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin