UHGV-0053444

Genome information

Genome length 33,803 bps

CDS count 57

Completeness 99.69% (high-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053444
vOTU ID	vOTU-008907
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_62969
BioSample	SAMEA2338825
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.36
Jumbo phage	No

Genome content
Genome length	33,803 bps
GC content	37.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.81%
Average CDS length	553.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053444_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053444_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0053444_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053444_4	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-0053444_4	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0053444_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053444_5	PHROG	phrog_199	holin	lysis
UHGV-0053444_5	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-0053444_5	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0053444_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0053444_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0053444_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0053444_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0053444_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0053444_6	PHROG	phrog_291	endolysin	lysis
UHGV-0053444_6	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0053444_6	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0053444_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0053444_6	COG	COG1388	LysM repeat	NA
UHGV-0053444_6	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0053444_7	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0053444_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0053444_8	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0053444_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0053444_9	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0053444_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0053444_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0053444_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0053444_9	COG	COG4926	Phage-related protein	NA
UHGV-0053444_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053444_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053444_10	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0053444_10	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0053444_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0053444_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0053444_11	PHROG	phrog_23464	NA	unknown function
UHGV-0053444_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0053444_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0053444_11	Structural annotation	COG3941	NA	NA
UHGV-0053444_14	PHROG	phrog_885	major tail protein	tail
UHGV-0053444_14	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0053444_14	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0053444_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0053444_15	Structural annotation	PF12691	NA	NA
UHGV-0053444_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053444_16	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0053444_16	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0053444_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053444_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0053444_16	Structural annotation	TIGR01725	NA	NA
UHGV-0053444_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0053444_17	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0053444_17	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0053444_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0053444_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0053444_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053444_18	PHROG	phrog_5223	neck protein	connector
UHGV-0053444_18	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0053444_18	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0053444_18	Structural annotation	TIGR01560	NA	NA
UHGV-0053444_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053444_19	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0053444_19	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0053444_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053444_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053444_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053444_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053444_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0053444_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0053444_20	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0053444_20	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0053444_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0053444_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0053444_20	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0053444_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053444_21	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0053444_21	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0053444_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053444_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053444_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053444_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053444_22	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0053444_22	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0053444_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053444_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053444_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053444_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0053444_23	PHROG	phrog_1066	NA	unknown function
UHGV-0053444_23	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0053444_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053444_24	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0053444_24	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0053444_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053444_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053444_25	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0053444_25	Structural annotation	TIGR01636	NA	NA
UHGV-0053444_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053444_26	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0053444_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0053444_28	PHROG	phrog_824	NA	unknown function
UHGV-0053444_28	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0053444_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0053444_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0053444_28	Structural annotation	PF08774	NA	NA
UHGV-0053444_29	PHROG	phrog_34599	NA	unknown function
UHGV-0053444_29	eggNOG-mapper	756272.Plabr_0248	NA	NA
UHGV-0053444_29	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0053444_29	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-0053444_30	PHROG	phrog_27044	NA	unknown function
UHGV-0053444_30	UniRef90	UniRef90_A0A3C2EJC9	QueT transporter family protein	NA
UHGV-0053444_30	eggNOG-mapper	1262449.CP6013_1197	membrane	NA
UHGV-0053444_30	Pfam	PF06177	QueT transporter	QueT
UHGV-0053444_30	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0053444_30	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0053444_32	PHROG	phrog_22746	NA	unknown function
UHGV-0053444_32	UniRef90	UniRef90_UPI0004070CEC	RAMP superfamily CRISPR-associated protein	NA
UHGV-0053444_32	eggNOG-mapper	107636.JQNK01000009_gene1999	crispr-associated protein	NA
UHGV-0053444_32	PADLOC	mkCas0183	CAS-IV-A; effector_G7	CRISPR-CAS
UHGV-0053444_32	Pfam	PF03787	RAMP superfamily	RAMPs
UHGV-0053444_32	COG	COG1857	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0053444_32	Structural annotation	PF01905, TIGR03115, COG1604	NA	NA
UHGV-0053444_34	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-0053444_35	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0053444_38	PHROG	phrog_25754	NA	unknown function
UHGV-0053444_38	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0053444_38	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0053444_40	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053444_40	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0053444_40	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0053444_40	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053444_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053444_41	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053444_41	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0053444_41	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0053444_41	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0053444_41	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0053444_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0053444_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0053444_42	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0053444_42	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0053444_42	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0053444_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0053444_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0053444_42	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0053444_43	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0053444_43	PHROG	phrog_24603	NA	unknown function
UHGV-0053444_43	eggNOG-mapper	1185653.A1A1_12322	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0053444_43	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0053444_43	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0053444_43	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0053444_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0053444_49	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0053444_50	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0053444_50	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0053444_50	Pfam	PF05339	NA	DUF739
UHGV-0053444_50	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0053444_50	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0053444_51	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0053444_51	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0053444_51	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0053444_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0053444_51	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0053444_52	PHROG	phrog_1914	NA	unknown function
UHGV-0053444_52	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053444_52	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0053444_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053444_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053444_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053444_53	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0053444_54	KOfam	K14059	int; integrase	NA
UHGV-0053444_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0053444_54	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-0053444_54	eggNOG-mapper	1469948.JPNB01000003_gene298	Belongs to the 'phage' integrase family	NA
UHGV-0053444_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0053444_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053444_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053444_54	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0053444_55	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0053444_55	PHROG	phrog_2825	polymerase	DNA, RNA and nucleotide metabolism
UHGV-0053444_55	UniRef90	UniRef90_A0A162J5U9	Reverse transcriptase domain-containing protein	NA
UHGV-0053444_55	eggNOG-mapper	537007.BLAHAN_06037	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0053444_55	PADLOC	retron_III-A1	NA	Retron
UHGV-0053444_55	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0053444_56	PHROG	phrog_24764	NA	unknown function
UHGV-0053444_56	UniRef90	UniRef90_A0A373KXV9	TnpV protein	NA
UHGV-0053444_56	eggNOG-mapper	511680.BUTYVIB_02251	NA	NA
UHGV-0053444_56	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0053444_56	Structural annotation	PF14198	NA	NA
UHGV-0053444_57	KOfam	K07667	kdpE; two-component system, OmpR family, KDP operon response regulator KdpE	NA
UHGV-0053444_57	PHROG	phrog_731	NA	unknown function
UHGV-0053444_57	UniRef90	UniRef90_A0A174Z9I9	Stage 0 sporulation protein A homolog	NA
UHGV-0053444_57	eggNOG-mapper	411461.DORFOR_00147	COG COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	NA
UHGV-0053444_57	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0053444_57	Pfam	PF00486	Transcriptional regulatory protein, C terminal	Trans_reg_C
UHGV-0053444_57	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0053444_57	Structural annotation	PF00072, PF00486, MF_00981, NF000401, COG0745	NA	NA