UHGV-0053587

Genome information

Genome length 28,011 bps

CDS count 44

Completeness 74.51% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053587
vOTU ID	vOTU-040167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_47329
BioSample	SAMEA1964687
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length	28,011 bps
GC content	43.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.41%
Average CDS length	611.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053587_1	PHROG	phrog_13256	NA	unknown function
UHGV-0053587_1	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0053587_3	Pfam	PF01456	Mucin-like glycoprotein	Mucin
UHGV-0053587_4	PHROG	phrog_6616	tail protein	tail
UHGV-0053587_4	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0053587_5	PHROG	phrog_1194	NA	unknown function
UHGV-0053587_5	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0053587_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0053587_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0053587_6	UniRef90	UniRef90_W0U887	Putative minor tail protein	NA
UHGV-0053587_6	eggNOG-mapper	1120746.CCNL01000014_gene2105	tape measure	NA
UHGV-0053587_6	COG	COG1511	NA	NA
UHGV-0053587_7	PHROG	phrog_706	NA	unknown function
UHGV-0053587_7	UniRef90	UniRef90_UPI000F54C5BC	Gp15 family bacteriophage protein	NA
UHGV-0053587_7	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0053587_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0053587_7	Structural annotation	PF06854	NA	NA
UHGV-0053587_8	PHROG	phrog_11299	NA	unknown function
UHGV-0053587_8	eggNOG-mapper	1160721.RBI_II00531	NA	NA
UHGV-0053587_8	Structural annotation	PF20378	NA	NA
UHGV-0053587_9	PHROG	phrog_3099	NA	unknown function
UHGV-0053587_9	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0053587_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0053587_10	PHROG	phrog_3266	tail completion	connector
UHGV-0053587_10	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0053587_10	Structural annotation	PF20765	NA	NA
UHGV-0053587_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0053587_11	UniRef90	UniRef90_UPI000F51D749	minor capsid protein	NA
UHGV-0053587_11	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0053587_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0053587_11	Structural annotation	PF11114	NA	NA
UHGV-0053587_12	PHROG	phrog_3366	NA	unknown function
UHGV-0053587_12	Pfam	PF20536	NA	DUF6751
UHGV-0053587_12	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0053587_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0053587_13	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0053587_14	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0053587_14	UniRef90	UniRef90_UPI000F51BE6D	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0053587_14	eggNOG-mapper	1122918.KB907248_gene4497	NA	NA
UHGV-0053587_14	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0053587_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0053587_15	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0053587_15	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0053587_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0053587_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053587_16	UniRef90	UniRef90_UPI000F547436	phage scaffolding protein	NA
UHGV-0053587_16	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0053587_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053587_16	Structural annotation	PF06810	NA	NA
UHGV-0053587_18	PHROG	phrog_5671	NA	unknown function
UHGV-0053587_18	eggNOG-mapper	552398.HMPREF0866_03130	NA	NA
UHGV-0053587_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0053587_20	UniRef90	UniRef90_UPI000F54A2BA	phage minor capsid protein	NA
UHGV-0053587_20	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0053587_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0053587_20	COG	COG2369	NA	NA
UHGV-0053587_20	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0053587_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0053587_21	UniRef90	UniRef90_UPI000F520C24	phage portal protein	NA
UHGV-0053587_21	eggNOG-mapper	1160721.RBI_II00542	NA	NA
UHGV-0053587_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0053587_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053587_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0053587_22	UniRef90	UniRef90_UPI000F5283E8	terminase family protein	NA
UHGV-0053587_22	eggNOG-mapper	1160721.RBI_II00543	Phage terminase, large subunit, PBSX family	NA
UHGV-0053587_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0053587_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053587_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0053587_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0053587_23	UniRef90	UniRef90_W0U9H3	Phage terminase, small subunit	NA
UHGV-0053587_23	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0053587_23	Structural annotation	PF07141	NA	NA
UHGV-0053587_24	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0053587_24	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0053587_24	UniRef90	UniRef90_UPI000F5398E7	transcription termination/antitermination NusG family protein	NA
UHGV-0053587_24	eggNOG-mapper	1160721.RBI_II00545	Transcription termination factor nusG	NA
UHGV-0053587_24	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0053587_24	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0053587_24	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0053587_25	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0053587_25	UniRef90	UniRef90_UPI000F520548	NA	NA
UHGV-0053587_25	eggNOG-mapper	1160721.RBI_II00546	NA	NA
UHGV-0053587_25	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0053587_25	Structural annotation	PF11985	NA	NA
UHGV-0053587_26	PHROG	phrog_25462	NA	unknown function
UHGV-0053587_26	UniRef90	UniRef90_UPI000F547D8B	type VI secretion protein	NA
UHGV-0053587_26	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0053587_26	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0053587_27	PHROG	phrog_462	lipoprotein	other
UHGV-0053587_27	eggNOG-mapper	1160721.RBI_II00548	NA	NA
UHGV-0053587_28	PHROG	phrog_3409	NA	unknown function
UHGV-0053587_28	UniRef90	UniRef90_UPI000F521D29	NA	NA
UHGV-0053587_28	eggNOG-mapper	977801.F0PIH7_9VIRU	NA	NA
UHGV-0053587_28	Pfam	PF17400	NA	DUF5406
UHGV-0053587_28	Structural annotation	PF17400	NA	NA
UHGV-0053587_29	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0053587_29	UniRef90	UniRef90_UPI000F54A4B8	DNA-binding protein	NA
UHGV-0053587_29	eggNOG-mapper	1160721.RBI_II00549	Mor transcription activator	NA
UHGV-0053587_29	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0053587_29	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0053587_29	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0053587_30	PHROG	phrog_286	NA	unknown function
UHGV-0053587_30	UniRef90	UniRef90_UPI000F51F9E5	regulatory protein GemA	NA
UHGV-0053587_30	eggNOG-mapper	1160721.RBI_II00550	NA	NA
UHGV-0053587_30	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0053587_30	Structural annotation	PF06252	NA	NA
UHGV-0053587_31	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0053587_31	AcrCatalog	cluster_71843	NA	NA
UHGV-0053587_32	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0053587_32	UniRef90	UniRef90_UPI000F5381F9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0053587_32	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0053587_32	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0053587_32	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0053587_36	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053587_36	UniRef90	UniRef90_UPI000F52910C	NA	NA
UHGV-0053587_36	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0053587_36	Pfam	PF12961	NA	DUF3850
UHGV-0053587_36	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0053587_37	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0053587_37	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0053587_37	UniRef90	UniRef90_UPI000F52FCE5	AAA family ATPase	NA
UHGV-0053587_37	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0053587_37	Pfam	PF13401	AAA domain	AAA_22
UHGV-0053587_37	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0053587_37	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0053587_38	PHROG	phrog_310	transposase	integration and excision
UHGV-0053587_38	UniRef90	UniRef90_UPI000F51F93D	Mu transposase C-terminal domain-containing protein	NA
UHGV-0053587_38	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0053587_38	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0053587_38	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0053587_38	Pfam	PF00665	Integrase core domain	rve
UHGV-0053587_38	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0053587_38	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0053587_38	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0053587_39	AcrCatalog	cluster_158759	NA	NA
UHGV-0053587_40	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0053587_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053587_40	UniRef90	UniRef90_UPI0019D1CD23	helix-turn-helix domain-containing protein	NA
UHGV-0053587_40	eggNOG-mapper	106370.Francci3_0807	Helix-turn-helix XRE-family like proteins	NA
UHGV-0053587_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0053587_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053587_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053587_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0053587_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0053587_43	UniRef90	UniRef90_UPI000F52F993	BRO family protein	NA
UHGV-0053587_43	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0053587_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0053587_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0053587_43	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0053587_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0053587_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0053587_44	UniRef90	UniRef90_UPI000F51F0AF	XRE family transcriptional regulator	NA
UHGV-0053587_44	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0053587_44	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0053587_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0053587_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0053587_44	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA