UHGV-0053655

Genome information

Genome length 32,242 bps

CDS count 42

Completeness 91.64% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053655
vOTU ID	vOTU-061329
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_59414
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.93
Jumbo phage	No

Genome content
Genome length	32,242 bps
GC content	39.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.61%
Average CDS length	690.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053655_2	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0053655_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0053655_3	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0053655_3	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0053655_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0053655_3	COG	COG1511	NA	NA
UHGV-0053655_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0053655_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053655_4	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0053655_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0053655_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0053655_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0053655_5	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0053655_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0053655_5	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0053655_5	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0053655_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0053655_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0053655_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0053655_6	Structural annotation	PF11836	NA	NA
UHGV-0053655_7	PHROG	phrog_88	major tail protein	tail
UHGV-0053655_7	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0053655_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0053655_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0053655_8	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0053655_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053655_8	Structural annotation	TIGR01725	NA	NA
UHGV-0053655_9	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0053655_9	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0053655_10	PHROG	phrog_19734	NA	unknown function
UHGV-0053655_10	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0053655_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053655_11	PHROG	phrog_749	NA	unknown function
UHGV-0053655_11	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0053655_11	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0053655_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053655_12	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0053655_12	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0053655_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053655_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053655_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053655_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053655_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0053655_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0053655_13	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0053655_13	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0053655_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0053655_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0053655_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0053655_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053655_14	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0053655_14	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0053655_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053655_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0053655_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053655_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053655_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053655_15	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0053655_15	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0053655_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053655_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053655_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053655_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0053655_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0053655_16	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0053655_16	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0053655_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0053655_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0053655_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053655_17	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0053655_17	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0053655_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0053655_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053655_18	PHROG	phrog_31049	NA	unknown function
UHGV-0053655_18	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0053655_18	Structural annotation	TIGR01636	NA	NA
UHGV-0053655_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053655_19	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0053655_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0053655_22	PHROG	phrog_824	NA	unknown function
UHGV-0053655_22	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0053655_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0053655_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0053655_22	Structural annotation	PF08774	NA	NA
UHGV-0053655_23	PHROG	phrog_24518	NA	unknown function
UHGV-0053655_23	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0053655_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0053655_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0053655_24	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0053655_24	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0053655_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0053655_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053655_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0053655_24	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0053655_25	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053655_25	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0053655_25	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0053655_25	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0053655_25	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0053655_26	PHROG	phrog_5696	NA	unknown function
UHGV-0053655_26	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0053655_26	eggNOG-mapper	397291.C804_06560	N-6 DNA Methylase	NA
UHGV-0053655_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0053655_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0053655_26	Structural annotation	COG0286	NA	NA
UHGV-0053655_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0053655_27	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0053655_27	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0053655_27	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0053655_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0053655_27	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0053655_27	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0053655_27	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0053655_29	Structural annotation	COG1862	NA	NA
UHGV-0053655_30	PHROG	phrog_6058	NA	unknown function
UHGV-0053655_30	eggNOG-mapper	1260356.D920_00020	NA	NA
UHGV-0053655_30	Structural annotation	NF033787	NA	NA
UHGV-0053655_31	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0053655_33	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0053655_33	Structural annotation	PF15597	NA	NA
UHGV-0053655_36	PHROG	phrog_585	NA	unknown function
UHGV-0053655_36	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0053655_36	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0053655_36	Pfam	PF10711	NA	DUF2513
UHGV-0053655_36	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0053655_38	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0053655_38	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0053655_38	Pfam	PF05339	NA	DUF739
UHGV-0053655_38	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0053655_38	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0053655_39	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0053655_39	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0053655_39	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0053655_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053655_39	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0053655_40	PHROG	phrog_1914	NA	unknown function
UHGV-0053655_40	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0053655_40	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0053655_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0053655_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0053655_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0053655_41	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0053655_41	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0053655_41	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0053655_42	KOfam	K14059	int; integrase	NA
UHGV-0053655_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0053655_42	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0053655_42	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0053655_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053655_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0053655_42	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA