UHGV-0053709

Genome information

Genome length 39,250 bps

CDS count 67

Completeness 86.96% (medium-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053709
vOTU ID	vOTU-036077
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_47684
BioSample	SAMEA2153251
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.85
Jumbo phage	No

Genome content
Genome length	39,250 bps
GC content	49.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.27%
Average CDS length	545.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053709_1	KOfam	K14059	int; integrase	NA
UHGV-0053709_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0053709_1	UniRef90	UniRef90_G4Q8Q7	Site-specific recombinase	NA
UHGV-0053709_1	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-0053709_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0053709_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053709_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053709_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0053709_2	PHROG	phrog_806	NA	unknown function
UHGV-0053709_2	UniRef90	UniRef90_A0A1B3WEZ6	NA	NA
UHGV-0053709_2	eggNOG-mapper	446470.Snas_1319	NA	NA
UHGV-0053709_2	Pfam	PF11611	NA	DUF4352
UHGV-0053709_2	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0053709_2	Structural annotation	PF11611, MF_00791, TIGR04209, COG2967	NA	NA
UHGV-0053709_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0053709_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0053709_3	UniRef90	UniRef90_UPI001D0986B9	XRE family transcriptional regulator	NA
UHGV-0053709_3	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-0053709_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053709_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0053709_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0053709_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0053709_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0053709_4	UniRef90	UniRef90_A0A4R1Q4B9	DNA-binding XRE family transcriptional regulator	NA
UHGV-0053709_4	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-0053709_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053709_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0053709_6	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0053709_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0053709_7	UniRef90	UniRef90_UPI0009F4DDBD	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0053709_7	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-0053709_7	COG	COG1388	LysM repeat	NA
UHGV-0053709_7	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0053709_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0053709_9	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0053709_9	eggNOG-mapper	888060.HMPREF9081_0431	Siphovirus Gp157	NA
UHGV-0053709_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0053709_9	Structural annotation	PF05565	NA	NA
UHGV-0053709_10	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0053709_10	UniRef90	UniRef90_UPI000D0EBA7D	ERF family protein	NA
UHGV-0053709_10	eggNOG-mapper	1145276.T479_16370	ERF superfamily	NA
UHGV-0053709_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0053709_10	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0053709_11	PHROG	phrog_9403	NA	unknown function
UHGV-0053709_13	KOfam	K11144	dnaI; primosomal protein DnaI	NA
UHGV-0053709_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0053709_13	UniRef90	UniRef90_UPI001D085F29	ATP-binding protein	NA
UHGV-0053709_13	eggNOG-mapper	591001.Acfer_1217	IstB-like ATP binding protein	NA
UHGV-0053709_13	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0053709_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0053709_13	Structural annotation	PF01695, MF_01158, NF006505, COG1484	NA	NA
UHGV-0053709_16	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0053709_20	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0053709_20	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0053709_20	UniRef90	UniRef90_UPI0018C54F0E	FAD-dependent thymidylate synthase	NA
UHGV-0053709_20	eggNOG-mapper	883156.HMPREF9282_00531	thymidylate synthase (FAD) activity	NA
UHGV-0053709_20	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0053709_20	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0053709_20	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0053709_20	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0053709_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0053709_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053709_21	UniRef90	UniRef90_UPI00094EA76A	single-stranded DNA-binding protein	NA
UHGV-0053709_21	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0053709_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0053709_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0053709_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0053709_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0053709_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0053709_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053709_23	UniRef90	UniRef90_A0A848EVK5	NA	NA
UHGV-0053709_23	eggNOG-mapper	1567014.A0A0A7RTV9_9VIRU	NA	NA
UHGV-0053709_23	Pfam	PF06356	NA	DUF1064
UHGV-0053709_23	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0053709_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-0053709_27	Pfam	PF11753	NA	DUF3310
UHGV-0053709_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053709_28	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-0053709_28	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-0053709_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0053709_29	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0053709_29	UniRef90	UniRef90_UPI000FD68CF7	ParB N-terminal domain-containing protein	NA
UHGV-0053709_29	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0053709_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0053709_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0053709_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0053709_29	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0053709_30	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0053709_30	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0053709_30	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0053709_30	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0053709_30	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0053709_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053709_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0053709_32	UniRef90	UniRef90_UPI001D088A8F	PBSX family phage terminase large subunit	NA
UHGV-0053709_32	eggNOG-mapper	1321779.HMPREF1984_01311	Phage terminase, large subunit, PBSX family	NA
UHGV-0053709_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0053709_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0053709_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0053709_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053709_32	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0053709_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053709_33	UniRef90	UniRef90_UPI001D072032	phage portal protein	NA
UHGV-0053709_33	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0053709_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053709_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0053709_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0053709_34	UniRef90	UniRef90_UPI001D06CDF6	minor capsid protein	NA
UHGV-0053709_34	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-0053709_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0053709_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0053709_34	COG	COG2369	NA	NA
UHGV-0053709_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0053709_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0053709_35	UniRef90	UniRef90_UPI001D078FD1	phage scaffolding protein	NA
UHGV-0053709_35	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-0053709_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0053709_35	Structural annotation	PF06810	NA	NA
UHGV-0053709_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0053709_36	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0053709_36	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-0053709_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0053709_38	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-0053709_38	Structural annotation	PF05135	NA	NA
UHGV-0053709_39	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0053709_39	UniRef90	UniRef90_T3D9B6	Putative phage protein	NA
UHGV-0053709_39	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-0053709_39	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0053709_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053709_40	UniRef90	UniRef90_UPI001D06F932	HK97 gp10 family phage protein	NA
UHGV-0053709_40	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0053709_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053709_41	PHROG	phrog_525	NA	unknown function
UHGV-0053709_41	Pfam	PF20765	NA	DUF6838
UHGV-0053709_41	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0053709_43	PHROG	phrog_279	tail sheath	tail
UHGV-0053709_43	UniRef90	UniRef90_UPI001D08667C	phage tail sheath family protein	NA
UHGV-0053709_43	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-0053709_43	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0053709_43	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0053709_43	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0053709_43	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0053709_44	PHROG	phrog_365	tail protein	tail
UHGV-0053709_44	UniRef90	UniRef90_UPI001D068A7F	phage tail tube protein	NA
UHGV-0053709_44	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-0053709_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0053709_44	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0053709_45	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0053709_45	UniRef90	UniRef90_R5SN61	XkdN-like protein	NA
UHGV-0053709_45	eggNOG-mapper	1111454.HMPREF1250_0166	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0053709_45	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0053709_45	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0053709_47	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0053709_47	UniRef90	UniRef90_UPI001D096802	tape measure protein	NA
UHGV-0053709_47	eggNOG-mapper	546273.VEIDISOL_00724	tape measure	NA
UHGV-0053709_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0053709_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0053709_47	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0053709_47	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0053709_48	PHROG	phrog_380	endolysin	lysis
UHGV-0053709_48	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0053709_48	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0053709_48	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0053709_48	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0053709_49	PHROG	phrog_400	tail protein	tail
UHGV-0053709_49	UniRef90	UniRef90_A0A0X8KCS4	Hydrolase	NA
UHGV-0053709_49	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0053709_49	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0053709_49	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0053709_50	PHROG	phrog_579	NA	unknown function
UHGV-0053709_50	UniRef90	UniRef90_UPI001D07A85E	NA	NA
UHGV-0053709_50	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0053709_50	Pfam	PF10844	NA	DUF2577
UHGV-0053709_50	Structural annotation	PF10844	NA	NA
UHGV-0053709_51	PHROG	phrog_120	baseplate protein	tail
UHGV-0053709_51	UniRef90	UniRef90_UPI001D05FF61	NA	NA
UHGV-0053709_51	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0053709_51	Pfam	PF10934	NA	DUF2634
UHGV-0053709_51	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0053709_51	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0053709_52	PHROG	phrog_6	baseplate protein	tail
UHGV-0053709_52	UniRef90	UniRef90_UPI001D090E33	baseplate J/gp47 family protein	NA
UHGV-0053709_52	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0053709_52	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0053709_52	COG	COG3299	NA	NA
UHGV-0053709_52	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0053709_53	PHROG	phrog_521	tail protein	tail
UHGV-0053709_53	UniRef90	UniRef90_UPI001D07DFAB	YmfQ family protein	NA
UHGV-0053709_53	eggNOG-mapper	469618.FVAG_01327	NA	NA
UHGV-0053709_53	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0053709_53	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0053709_53	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0053709_54	PHROG	phrog_5717	tail protein	tail
UHGV-0053709_54	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0053709_54	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0053709_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0053709_54	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-0053709_55	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-0053709_57	PHROG	phrog_24267	NA	unknown function
UHGV-0053709_57	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0053709_57	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0053709_57	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0053709_58	KOfam	K14059	int; integrase	NA
UHGV-0053709_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0053709_58	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-0053709_58	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0053709_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053709_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053709_58	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0053709_59	UniRef90	UniRef90_UPI000A80AF94	site-specific integrase	NA
UHGV-0053709_59	eggNOG-mapper	883156.HMPREF9282_01261	Phage integrase family	NA
UHGV-0053709_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0053709_62	PHROG	phrog_5867	endolysin	lysis
UHGV-0053709_62	UniRef90	UniRef90_UPI001C433E67	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053709_62	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0053709_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0053709_62	Structural annotation	MF_04111	NA	NA
UHGV-0053709_63	PHROG	phrog_10797	NA	unknown function
UHGV-0053709_63	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-0053709_63	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-0053709_63	Structural annotation	PF06531	NA	NA
UHGV-0053709_64	eggNOG-mapper	591001.Acfer_1156	NA	NA
UHGV-0053709_64	Structural annotation	PF04232, MF_01122, NF003088	NA	NA
UHGV-0053709_66	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-0053709_67	UniRef90	UniRef90_UPI0008F42D49	helix-turn-helix domain-containing protein	NA
UHGV-0053709_67	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0053709_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0053709_67	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0053709_67	Structural annotation	PF01381, NF040522, COG2944	NA	NA