UHGV-0053922

Genome information

Genome length 21,790 bps

CDS count 30

Completeness 51.71% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053922
vOTU ID	vOTU-038971
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_45788
BioSample	SAMEA2159102
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.41
Jumbo phage	No

Genome content
Genome length	21,790 bps
GC content	46.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	91.87%
Average CDS length	671.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053922_1	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0053922_1	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0053922_1	UniRef90	UniRef90_A0A416KE46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0053922_1	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0053922_1	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0053922_1	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0053922_1	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0053922_3	Structural annotation	PF01246, MF_00773, NF041909, COG2075	NA	NA
UHGV-0053922_4	UniRef90	UniRef90_UPI001897C27C	NA	NA
UHGV-0053922_4	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0053922_4	Pfam	PF04448	NA	DUF551
UHGV-0053922_4	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0053922_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0053922_5	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0053922_5	UniRef90	UniRef90_UPI0015948491	site-specific DNA-methyltransferase	NA
UHGV-0053922_5	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-0053922_5	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0053922_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0053922_5	COG	COG0863	DNA modification methylase	NA
UHGV-0053922_5	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0053922_7	PHROG	phrog_6568	NA	unknown function
UHGV-0053922_7	eggNOG-mapper	742733.HMPREF9469_05046	NA	NA
UHGV-0053922_8	PHROG	phrog_25231	NA	unknown function
UHGV-0053922_8	eggNOG-mapper	742733.HMPREF9469_06061	NA	NA
UHGV-0053922_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053922_9	UniRef90	UniRef90_UPI000836D5C7	RNA polymerase subunit sigma-70	NA
UHGV-0053922_9	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0053922_9	Structural annotation	PF02996	NA	NA
UHGV-0053922_10	UniRef90	UniRef90_UPI001ABED7C8	NA	NA
UHGV-0053922_10	eggNOG-mapper	1226322.HMPREF1545_00393	NA	NA
UHGV-0053922_10	Structural annotation	PF15931, MF_00194, NF001460, COG2974	NA	NA
UHGV-0053922_11	eggNOG-mapper	931276.Cspa_c09920	NA	NA
UHGV-0053922_12	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0053922_12	UniRef90	UniRef90_UPI0009D78BBE	phage terminase small subunit	NA
UHGV-0053922_12	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0053922_12	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0053922_12	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0053922_12	COG	COG5484	NA	NA
UHGV-0053922_12	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0053922_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0053922_13	PHROG	phrog_10250	NA	unknown function
UHGV-0053922_13	UniRef90	UniRef90_UPI0008362B79	PBSX family phage terminase large subunit	NA
UHGV-0053922_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0053922_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0053922_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0053922_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0053922_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0053922_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0053922_14	UniRef90	UniRef90_UPI00082D8FC1	phage portal protein	NA
UHGV-0053922_14	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0053922_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0053922_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0053922_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0053922_15	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0053922_15	UniRef90	UniRef90_A0A3P3TX94	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0053922_15	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0053922_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0053922_15	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0053922_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0053922_15	COG	COG2369	NA	NA
UHGV-0053922_15	Structural annotation	PF06152	NA	NA
UHGV-0053922_16	PHROG	phrog_8857	NA	unknown function
UHGV-0053922_17	PHROG	phrog_918	NA	unknown function
UHGV-0053922_17	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0053922_17	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0053922_17	Pfam	PF19791	NA	DUF6275
UHGV-0053922_17	Structural annotation	PF19791	NA	NA
UHGV-0053922_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0053922_18	UniRef90	UniRef90_UPI000830F4E8	NA	NA
UHGV-0053922_18	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0053922_18	Pfam	PF14265	NA	DUF4355
UHGV-0053922_18	Structural annotation	PF14265	NA	NA
UHGV-0053922_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0053922_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0053922_19	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0053922_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0053922_20	PHROG	phrog_2724	NA	unknown function
UHGV-0053922_20	UniRef90	UniRef90_UPI00082CD023	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0053922_20	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0053922_20	Structural annotation	PF07498	NA	NA
UHGV-0053922_21	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0053922_21	UniRef90	UniRef90_UPI000834B7A8	phage head-tail connector protein	NA
UHGV-0053922_21	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0053922_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0053922_21	Structural annotation	PF05135	NA	NA
UHGV-0053922_22	PHROG	phrog_2168	NA	unknown function
UHGV-0053922_22	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0053922_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0053922_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0053922_23	UniRef90	UniRef90_UPI0008314C69	HK97 gp10 family phage protein	NA
UHGV-0053922_23	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0053922_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0053922_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0053922_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0053922_24	PHROG	phrog_78	tail terminator	connector
UHGV-0053922_24	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0053922_24	Structural annotation	PF05657	NA	NA
UHGV-0053922_25	PHROG	phrog_158	major tail protein	tail
UHGV-0053922_25	UniRef90	UniRef90_UPI00082AC77B	phage tail protein	NA
UHGV-0053922_25	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0053922_25	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0053922_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0053922_26	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0053922_26	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0053922_26	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0053922_26	Pfam	PF19591	NA	DUF6096
UHGV-0053922_26	Structural annotation	PF19591	NA	NA
UHGV-0053922_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0053922_28	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0053922_28	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0053922_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0053922_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0053922_29	PHROG	phrog_1194	NA	unknown function
UHGV-0053922_29	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0053922_29	Pfam	PF20458	NA	DUF6711
UHGV-0053922_29	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0053922_30	PHROG	phrog_18190	NA	unknown function
UHGV-0053922_30	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0053922_30	Structural annotation	PF09931, COG3500	NA	NA