UHGV-0053930

Genome information

Genome length 13,519 bps

CDS count 15

Completeness 59.88% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0053930
vOTU ID	vOTU-034457
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64985
BioSample	SAMEA2338781
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.39
Jumbo phage	No

Genome content
Genome length	13,519 bps
GC content	36.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	93.14%
Average CDS length	840.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053930_1	eggNOG-mapper	1499680.CCFE01000011_gene323	Pectate lyase superfamily protein	NA
UHGV-0053930_1	COG	COG5434	Polygalacturonase	NA
UHGV-0053930_1	Structural annotation	PF12708, TIGR03808, COG5434	NA	NA
UHGV-0053930_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0053930_2	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0053930_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0053930_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0053930_3	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0053930_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0053930_3	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0053930_4	PHROG	phrog_2248	tail protein	tail
UHGV-0053930_4	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0053930_4	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0053930_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0053930_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0053930_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0053930_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0053930_5	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0053930_5	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0053930_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0053930_7	PHROG	phrog_11037	NA	unknown function
UHGV-0053930_7	UniRef90	UniRef90_R2NXP3	Phage_lysozyme2 domain-containing protein	NA
UHGV-0053930_7	eggNOG-mapper	10753.B7SSN4_BPNF	NA	NA
UHGV-0053930_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0053930_7	Structural annotation	PF18013	NA	NA
UHGV-0053930_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0053930_8	PHROG	phrog_291	endolysin	lysis
UHGV-0053930_8	UniRef90	UniRef90_E6MGW6	Glycosyl hydrolase family 25	NA
UHGV-0053930_8	eggNOG-mapper	887929.HMP0721_1250	hydrolase, family 25	NA
UHGV-0053930_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0053930_8	COG	COG1388	LysM repeat	NA
UHGV-0053930_8	Structural annotation	PF01183, PF11910, MF_01354, COG3757, COG2139	NA	NA
UHGV-0053930_10	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053930_10	Structural annotation	PF17548	NA	NA
UHGV-0053930_11	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0053930_11	UniRef90	UniRef90_B6RT34	SsDNA binding protein	NA
UHGV-0053930_11	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0053930_11	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0053930_11	Structural annotation	PF17427	NA	NA
UHGV-0053930_12	Structural annotation	PF05435	NA	NA
UHGV-0053930_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0053930_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0053930_13	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0053930_13	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0053930_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0053930_13	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0053930_14	PHROG	phrog_2150	terminase	head and packaging
UHGV-0053930_14	UniRef90	UniRef90_A0A843GP34	Phage DNA encapsidation protein	NA
UHGV-0053930_14	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0053930_14	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0053930_14	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA