UHGV-0054103

Genome information

Genome length 35,136 bps

CDS count 54

Completeness 94.21% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054103
vOTU ID	vOTU-010287
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_40663
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.51
Jumbo phage	No

Genome content
Genome length	35,136 bps
GC content	40.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.23%
Average CDS length	622.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054103_1	KOfam	K14059	int; integrase	NA
UHGV-0054103_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0054103_1	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0054103_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0054103_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0054103_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0054103_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0054103_2	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0054103_3	PHROG	phrog_20886	NA	unknown function
UHGV-0054103_3	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0054103_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0054103_4	UniRef90	UniRef90_UPI00156E7917	helix-turn-helix domain-containing protein	NA
UHGV-0054103_4	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0054103_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0054103_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0054103_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054103_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0054103_5	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0054103_5	UniRef90	UniRef90_UPI00156EEDF5	helix-turn-helix domain-containing protein	NA
UHGV-0054103_5	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054103_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054103_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054103_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054103_6	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0054103_6	Structural annotation	PF20063	NA	NA
UHGV-0054103_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054103_8	UniRef90	UniRef90_A0A3R6XK93	Recombinase	NA
UHGV-0054103_8	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0054103_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0054103_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0054103_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0054103_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0054103_10	PHROG	phrog_674	NA	unknown function
UHGV-0054103_10	UniRef90	UniRef90_UPI00156FBAC2	NA	NA
UHGV-0054103_10	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0054103_10	Pfam	PF07083	NA	DUF1351
UHGV-0054103_10	Structural annotation	PF07083	NA	NA
UHGV-0054103_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0054103_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0054103_12	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0054103_12	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0054103_12	Pfam	PF03837	RecT family	RecT
UHGV-0054103_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0054103_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0054103_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0054103_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0054103_13	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0054103_13	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0054103_13	Pfam	PF06356	NA	DUF1064
UHGV-0054103_13	Structural annotation	PF06356	NA	NA
UHGV-0054103_14	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0054103_15	PHROG	phrog_16304	NA	unknown function
UHGV-0054103_15	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0054103_15	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0054103_15	Pfam	PF19808	NA	DUF6291
UHGV-0054103_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054103_15	Structural annotation	PF19808	NA	NA
UHGV-0054103_17	PHROG	phrog_9804	NA	unknown function
UHGV-0054103_17	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0054103_17	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0054103_17	AcrCatalog	cluster_137185	NA	NA
UHGV-0054103_17	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0054103_17	Structural annotation	PF11417	NA	NA
UHGV-0054103_18	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0054103_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0054103_21	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0054103_21	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0054103_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0054103_21	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0054103_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0054103_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0054103_22	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0054103_22	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0054103_22	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0054103_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0054103_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0054103_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0054103_23	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0054103_24	Structural annotation	COG4446	NA	NA
UHGV-0054103_25	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0054103_25	UniRef90	UniRef90_A0A417W9V0	NA	NA
UHGV-0054103_25	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0054103_25	Pfam	PF11753	NA	DUF3310
UHGV-0054103_26	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0054103_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0054103_26	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-0054103_26	eggNOG-mapper	1416009.V9VCU4_9CAUD	NA	NA
UHGV-0054103_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0054103_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0054103_26	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0054103_27	PHROG	phrog_8684	NA	unknown function
UHGV-0054103_27	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-0054103_27	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0054103_27	Pfam	PF09643	YopX protein	YopX
UHGV-0054103_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054103_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054103_29	PHROG	phrog_17690	NA	unknown function
UHGV-0054103_29	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0054103_29	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0054103_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054103_30	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0054103_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0054103_30	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0054103_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0054103_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0054103_32	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-0054103_32	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0054103_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0054103_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0054103_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0054103_33	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0054103_33	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-0054103_33	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0054103_33	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0054103_33	COG	COG5410	NA	NA
UHGV-0054103_33	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0054103_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0054103_34	UniRef90	UniRef90_A0A3R6UWR4	Phage portal protein	NA
UHGV-0054103_34	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054103_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054103_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0054103_37	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0054103_37	UniRef90	UniRef90_A0A8D9L2C5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0054103_37	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0054103_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0054103_37	COG	COG2369	NA	NA
UHGV-0054103_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0054103_38	eggNOG-mapper	861454.HMPREF9099_02115	NA	NA
UHGV-0054103_39	PHROG	phrog_872	NA	unknown function
UHGV-0054103_39	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-0054103_39	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0054103_39	Pfam	PF11195	NA	DUF2829
UHGV-0054103_39	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0054103_39	Structural annotation	PF11195	NA	NA
UHGV-0054103_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0054103_40	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0054103_40	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0054103_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0054103_40	Structural annotation	PF06810	NA	NA
UHGV-0054103_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0054103_41	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0054103_41	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0054103_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0054103_43	PHROG	phrog_1236	head protein	head and packaging
UHGV-0054103_43	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0054103_43	Structural annotation	PF05135	NA	NA
UHGV-0054103_44	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0054103_44	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0054103_44	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0054103_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054103_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054103_45	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0054103_45	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0054103_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0054103_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0054103_46	PHROG	phrog_957	head protein	head and packaging
UHGV-0054103_46	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0054103_46	Structural annotation	PF12691	NA	NA
UHGV-0054103_47	PHROG	phrog_885	major tail protein	tail
UHGV-0054103_47	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0054103_47	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0054103_48	PHROG	phrog_1021	NA	unknown function
UHGV-0054103_48	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0054103_49	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0054103_50	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0054103_50	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0054103_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0054103_50	Structural annotation	PF20155, MF_04138, COG3941	NA	NA
UHGV-0054103_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0054103_51	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0054103_51	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0054103_51	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0054103_52	PHROG	phrog_538	minor tail protein	tail
UHGV-0054103_52	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0054103_52	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0054103_52	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0054103_52	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0054103_53	PHROG	phrog_9994	NA	unknown function
UHGV-0054103_53	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0054103_54	PHROG	phrog_199	holin	lysis
UHGV-0054103_54	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0054103_54	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0054103_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0054103_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0054103_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0054103_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA