UHGV-0054140

Genome information

Genome length 52,763 bps

CDS count 90

Completeness 94.78% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054140
vOTU ID	vOTU-081738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_42971
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.67
Jumbo phage	No

Genome content
Genome length	52,763 bps
GC content	37.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	90
CDS density	89.80%
Average CDS length	530.13 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054140_2	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0054140_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0054140_2	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0054140_6	PHROG	phrog_19106	NA	unknown function
UHGV-0054140_6	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0054140_6	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0054140_6	Structural annotation	TIGR01453	NA	NA
UHGV-0054140_7	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054140_7	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0054140_7	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0054140_10	PHROG	phrog_10714	NA	unknown function
UHGV-0054140_10	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0054140_11	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0054140_11	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-0054140_11	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0054140_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0054140_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054140_11	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0054140_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054140_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054140_12	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0054140_12	eggNOG-mapper	515620.EUBELI_01955	Single-stranded DNA-binding protein	NA
UHGV-0054140_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054140_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0054140_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054140_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0054140_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0054140_14	PHROG	phrog_8684	NA	unknown function
UHGV-0054140_14	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0054140_14	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0054140_14	Pfam	PF09643	YopX protein	YopX
UHGV-0054140_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054140_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054140_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054140_17	PHROG	phrog_2776	NA	unknown function
UHGV-0054140_17	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0054140_17	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0054140_17	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0054140_21	PHROG	phrog_7711	NA	unknown function
UHGV-0054140_21	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0054140_21	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0054140_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0054140_22	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0054140_22	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-0054140_22	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0054140_22	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0054140_22	dbAPIS	APIS058	NA	NA
UHGV-0054140_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0054140_22	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0054140_23	PHROG	phrog_15480	methyltransferase	other
UHGV-0054140_23	UniRef90	UniRef90_A0A1C5WPJ5	Spermidine synthase	NA
UHGV-0054140_23	eggNOG-mapper	1232447.BAHW02000015_gene1049	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	NA
UHGV-0054140_23	COG	COG4262	Predicted spermidine synthase with an N-terminal membrane domain	NA
UHGV-0054140_23	Structural annotation	PF02527, MF_02217, NF041650, COG2263	NA	NA
UHGV-0054140_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0054140_24	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0054140_24	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0054140_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0054140_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0054140_25	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0054140_25	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0054140_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0054140_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0054140_25	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0054140_26	PHROG	phrog_25456	NA	unknown function
UHGV-0054140_27	KOfam	K06940	NA	NA
UHGV-0054140_27	PHROG	phrog_32498	NA	unknown function
UHGV-0054140_27	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0054140_27	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0054140_27	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0054140_28	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0054140_28	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0054140_28	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0054140_28	Pfam	PF03837	RecT family	RecT
UHGV-0054140_28	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0054140_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0054140_28	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0054140_29	PHROG	phrog_2164	NA	unknown function
UHGV-0054140_30	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0054140_30	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054140_30	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0054140_30	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0054140_30	Pfam	PF13476	AAA domain	AAA_23
UHGV-0054140_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0054140_30	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0054140_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054140_31	PHROG	phrog_26861	NA	unknown function
UHGV-0054140_31	UniRef90	UniRef90_R6LGA2	Single-strand binding family protein	NA
UHGV-0054140_31	eggNOG-mapper	469618.FVAG_01197	Single-stranded DNA-binding protein	NA
UHGV-0054140_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054140_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054140_31	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629, COG5569	NA	NA
UHGV-0054140_33	PHROG	phrog_32437	NA	unknown function
UHGV-0054140_33	UniRef90	UniRef90_A0A139CW26	Soluble lytic murein transglycosylase	NA
UHGV-0054140_33	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0054140_33	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0054140_33	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0054140_34	PHROG	phrog_4292	NA	unknown function
UHGV-0054140_34	eggNOG-mapper	397290.C810_01449	NA	NA
UHGV-0054140_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0054140_35	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0054140_35	UniRef90	UniRef90_A0A844E191	Phage antirepressor Ant	NA
UHGV-0054140_35	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0054140_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054140_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054140_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0054140_35	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0054140_36	UniRef90	UniRef90_UPI001897F865	helix-turn-helix domain-containing protein	NA
UHGV-0054140_36	eggNOG-mapper	699218.HMPREF0889_0316	NA	NA
UHGV-0054140_36	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0054140_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0054140_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054140_37	UniRef90	UniRef90_UPI001ADDE640	helix-turn-helix domain-containing protein	NA
UHGV-0054140_37	eggNOG-mapper	699218.HMPREF0889_0317	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0054140_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054140_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0054140_37	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0054140_40	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0054140_40	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0054140_40	UniRef90	UniRef90_R6RRS4	LysM domain/M23/M37 peptidase domain protein	NA
UHGV-0054140_40	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0054140_40	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0054140_40	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0054140_40	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0054140_41	Structural annotation	PF15911	NA	NA
UHGV-0054140_42	PHROG	phrog_6616	tail protein	tail
UHGV-0054140_42	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0054140_43	PHROG	phrog_1401	NA	unknown function
UHGV-0054140_43	eggNOG-mapper	1415775.U729_2617	NA	NA
UHGV-0054140_43	Structural annotation	PF07761	NA	NA
UHGV-0054140_44	PHROG	phrog_1194	NA	unknown function
UHGV-0054140_44	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0054140_44	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0054140_45	PHROG	phrog_28918	NA	unknown function
UHGV-0054140_45	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0054140_45	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0054140_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0054140_47	PHROG	phrog_36112	NA	unknown function
UHGV-0054140_47	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0054140_47	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0054140_47	Structural annotation	PF11836	NA	NA
UHGV-0054140_48	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0054140_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0054140_49	Structural annotation	PF05657	NA	NA
UHGV-0054140_50	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0054140_51	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0054140_51	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0054140_52	PHROG	phrog_18218	NA	unknown function
UHGV-0054140_52	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0054140_52	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0054140_52	Structural annotation	PF06946	NA	NA
UHGV-0054140_53	PHROG	phrog_4105	NA	unknown function
UHGV-0054140_53	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0054140_54	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0054140_55	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0054140_55	Structural annotation	PF21169	NA	NA
UHGV-0054140_56	PHROG	phrog_29	major head protein	head and packaging
UHGV-0054140_56	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0054140_56	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0054140_56	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0054140_56	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0054140_57	PHROG	phrog_909	major head protein	head and packaging
UHGV-0054140_57	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0054140_58	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0054140_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0054140_59	UniRef90	UniRef90_A0A416G2F2	Phage portal protein	NA
UHGV-0054140_59	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054140_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054140_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0054140_60	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0054140_61	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054140_61	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0054140_61	Structural annotation	PF02996	NA	NA
UHGV-0054140_62	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0054140_62	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0054140_62	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0054140_62	COG	COG5410	NA	NA
UHGV-0054140_62	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0054140_63	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0054140_63	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0054140_63	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0054140_65	Structural annotation	NF040508	NA	NA
UHGV-0054140_70	eggNOG-mapper	1499968.TCA2_4415	NA	NA
UHGV-0054140_70	Structural annotation	PF12286	NA	NA
UHGV-0054140_73	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0054140_73	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0054140_74	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0054140_74	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0054140_76	eggNOG-mapper	658655.HMPREF0988_00903	NA	NA
UHGV-0054140_80	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0054140_81	PHROG	phrog_10678	NA	unknown function
UHGV-0054140_84	PHROG	phrog_1233	NA	unknown function
UHGV-0054140_84	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0054140_84	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0054140_84	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0054140_86	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0054140_87	PHROG	phrog_20016	NA	unknown function
UHGV-0054140_87	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0054140_87	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0054140_87	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0054140_88	PHROG	phrog_16490	NA	unknown function
UHGV-0054140_88	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0054140_90	PHROG	phrog_21718	NA	unknown function
UHGV-0054140_90	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0054140_90	Structural annotation	NF033819	NA	NA