UHGV-0054188

Genome information

Genome length 46,386 bps

CDS count 78

Completeness 81.36% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054188
vOTU ID	vOTU-017970
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64070
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.01
Jumbo phage	No

Genome content
Genome length	46,386 bps
GC content	36.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	88.25%
Average CDS length	527.50 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054188_1	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0054188_1	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0054188_1	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-0054188_1	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0054188_1	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0054188_1	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0054188_4	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA
UHGV-0054188_5	PHROG	phrog_9804	NA	unknown function
UHGV-0054188_5	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0054188_5	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0054188_5	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0054188_5	Structural annotation	PF11417	NA	NA
UHGV-0054188_6	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0054188_6	UniRef90	UniRef90_A0A098AW53	Phage replication protein	NA
UHGV-0054188_6	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0054188_6	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0054188_6	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0054188_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054188_6	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0054188_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0054188_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0054188_7	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0054188_7	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0054188_7	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0054188_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0054188_7	COG	COG0863	DNA modification methylase	NA
UHGV-0054188_7	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0054188_8	PHROG	phrog_19106	NA	unknown function
UHGV-0054188_8	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0054188_8	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0054188_8	Structural annotation	TIGR01453	NA	NA
UHGV-0054188_9	PHROG	phrog_20593	NA	unknown function
UHGV-0054188_10	PHROG	phrog_10714	NA	unknown function
UHGV-0054188_10	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0054188_10	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0054188_11	PHROG	phrog_10714	NA	unknown function
UHGV-0054188_11	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0054188_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054188_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054188_12	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0054188_12	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0054188_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054188_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0054188_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054188_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0054188_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0054188_14	PHROG	phrog_8684	NA	unknown function
UHGV-0054188_14	UniRef90	UniRef90_A0A173W6W0	YopX protein	NA
UHGV-0054188_14	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0054188_14	Pfam	PF09643	YopX protein	YopX
UHGV-0054188_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054188_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054188_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054188_17	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0054188_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0054188_19	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0054188_19	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0054188_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0054188_19	dbAPIS	APIS058	NA	NA
UHGV-0054188_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0054188_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0054188_20	PHROG	phrog_9822	NA	unknown function
UHGV-0054188_21	PHROG	phrog_25456	NA	unknown function
UHGV-0054188_22	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0054188_22	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0054188_22	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0054188_22	Pfam	PF03837	RecT family	RecT
UHGV-0054188_22	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0054188_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0054188_22	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0054188_23	PHROG	phrog_2164	NA	unknown function
UHGV-0054188_23	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0054188_24	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0054188_24	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054188_24	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0054188_24	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0054188_24	Pfam	PF13476	AAA domain	AAA_23
UHGV-0054188_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0054188_24	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0054188_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054188_26	PHROG	phrog_26861	NA	unknown function
UHGV-0054188_26	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0054188_26	eggNOG-mapper	1121335.Clst_1307	PFAM single-strand binding protein	NA
UHGV-0054188_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054188_26	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0054188_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054188_26	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0054188_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0054188_28	Structural annotation	PF10552	NA	NA
UHGV-0054188_30	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0054188_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0054188_30	UniRef90	UniRef90_UPI00119E59CF	phage antirepressor KilAC domain-containing protein	NA
UHGV-0054188_30	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0054188_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054188_30	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054188_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0054188_30	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0054188_31	PHROG	phrog_18781	NA	unknown function
UHGV-0054188_31	UniRef90	UniRef90_N9Z4T1	T5orf172 domain-containing protein	NA
UHGV-0054188_31	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0054188_31	Structural annotation	PF10544	NA	NA
UHGV-0054188_35	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0054188_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0054188_35	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0054188_35	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0054188_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0054188_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054188_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054188_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054188_36	Structural annotation	PF13108	NA	NA
UHGV-0054188_37	KOfam	K07273	acm; lysozyme	NA
UHGV-0054188_37	PHROG	phrog_291	endolysin	lysis
UHGV-0054188_37	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0054188_37	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0054188_37	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054188_37	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0054188_37	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0054188_38	eggNOG-mapper	1139219.I569_00244	NA	NA
UHGV-0054188_39	PHROG	phrog_16267	NA	unknown function
UHGV-0054188_39	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0054188_39	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0054188_39	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0054188_39	COG	COG4926	Phage-related protein	NA
UHGV-0054188_39	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0054188_40	PHROG	phrog_1401	NA	unknown function
UHGV-0054188_40	Structural annotation	PF07761	NA	NA
UHGV-0054188_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0054188_42	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0054188_42	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0054188_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054188_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054188_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0054188_42	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0054188_44	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-0054188_44	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0054188_45	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0054188_46	PHROG	phrog_28918	NA	unknown function
UHGV-0054188_46	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0054188_46	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0054188_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0054188_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0054188_48	PHROG	phrog_36112	NA	unknown function
UHGV-0054188_48	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0054188_48	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0054188_48	Structural annotation	PF16478	NA	NA
UHGV-0054188_50	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0054188_50	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0054188_51	Structural annotation	PF05657	NA	NA
UHGV-0054188_52	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0054188_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0054188_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0054188_54	PHROG	phrog_1129	holin	lysis
UHGV-0054188_54	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0054188_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0054188_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0054188_54	Structural annotation	PF06946	NA	NA
UHGV-0054188_55	PHROG	phrog_4105	NA	unknown function
UHGV-0054188_55	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0054188_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0054188_57	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0054188_57	Structural annotation	PF21169	NA	NA
UHGV-0054188_58	PHROG	phrog_544	major head protein	head and packaging
UHGV-0054188_58	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0054188_58	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0054188_58	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0054188_58	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0054188_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0054188_60	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0054188_60	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054188_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054188_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0054188_61	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0054188_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054188_62	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0054188_62	Structural annotation	PF02996	NA	NA
UHGV-0054188_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0054188_63	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0054188_63	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0054188_63	COG	COG5410	NA	NA
UHGV-0054188_63	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0054188_74	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0054188_74	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0054188_75	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0054188_75	UniRef90	UniRef90_UPI001020B14A	DnaD domain protein	NA
UHGV-0054188_75	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-0054188_75	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054188_75	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0054188_76	PHROG	phrog_236	nucleotide kinase	other
UHGV-0054188_76	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-0054188_76	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0054188_76	Pfam	PF11753	NA	DUF3310
UHGV-0054188_76	Structural annotation	PF11753	NA	NA
UHGV-0054188_77	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0054188_77	eggNOG-mapper	537007.BLAHAN_05009	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0054188_77	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0054188_77	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0054188_77	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0054188_77	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0054188_78	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0054188_78	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0054188_78	Structural annotation	PF16677	NA	NA