UHGV-0054211

Genome information

Genome length 29,938 bps

CDS count 47

Completeness 71.64% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054211
vOTU ID	vOTU-034013
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32936
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.68
Jumbo phage	No

Genome content
Genome length	29,938 bps
GC content	51.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.27%
Average CDS length	558.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054211_1	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0054211_5	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0054211_6	PHROG	phrog_872	NA	unknown function
UHGV-0054211_6	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0054211_6	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0054211_6	Pfam	PF11195	NA	DUF2829
UHGV-0054211_6	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0054211_6	Structural annotation	PF11195	NA	NA
UHGV-0054211_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0054211_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054211_8	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0054211_8	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0054211_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0054211_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054211_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054211_9	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0054211_9	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0054211_9	Structural annotation	PF13542	NA	NA
UHGV-0054211_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0054211_10	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0054211_10	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0054211_10	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0054211_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0054211_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0054211_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0054211_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0054211_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0054211_11	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0054211_11	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0054211_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054211_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0054211_13	PHROG	phrog_8680	NA	unknown function
UHGV-0054211_13	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0054211_13	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0054211_13	Pfam	PF14386	NA	DUF4417
UHGV-0054211_13	Structural annotation	PF14386	NA	NA
UHGV-0054211_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0054211_14	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0054211_14	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0054211_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0054211_14	COG	COG2369	NA	NA
UHGV-0054211_14	Structural annotation	PF06152	NA	NA
UHGV-0054211_15	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0054211_15	Structural annotation	PF06810	NA	NA
UHGV-0054211_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0054211_16	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0054211_16	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0054211_16	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0054211_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0054211_17	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0054211_18	PHROG	phrog_3366	NA	unknown function
UHGV-0054211_18	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0054211_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0054211_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0054211_19	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0054211_19	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0054211_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0054211_19	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0054211_20	PHROG	phrog_3266	tail completion	connector
UHGV-0054211_20	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0054211_20	Structural annotation	PF12691	NA	NA
UHGV-0054211_21	PHROG	phrog_3099	NA	unknown function
UHGV-0054211_21	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0054211_21	Structural annotation	TIGR02126	NA	NA
UHGV-0054211_22	PHROG	phrog_11299	NA	unknown function
UHGV-0054211_22	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0054211_22	Structural annotation	PF10666	NA	NA
UHGV-0054211_23	PHROG	phrog_706	NA	unknown function
UHGV-0054211_23	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0054211_23	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0054211_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0054211_23	Structural annotation	PF06854	NA	NA
UHGV-0054211_24	PHROG	phrog_17658	NA	unknown function
UHGV-0054211_24	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0054211_24	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0054211_24	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0054211_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0054211_25	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0054211_25	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0054211_25	COG	COG1511	NA	NA
UHGV-0054211_25	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0054211_26	PHROG	phrog_1194	NA	unknown function
UHGV-0054211_26	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0054211_26	Pfam	PF20458	NA	DUF6711
UHGV-0054211_26	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0054211_27	PHROG	phrog_32308	NA	unknown function
UHGV-0054211_27	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0054211_27	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0054211_27	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0054211_28	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0054211_28	Structural annotation	PF14594	NA	NA
UHGV-0054211_29	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0054211_31	PHROG	phrog_21962	tail protein	tail
UHGV-0054211_31	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0054211_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0054211_31	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0054211_32	PHROG	phrog_37900	NA	unknown function
UHGV-0054211_32	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0054211_32	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0054211_32	Pfam	PF19789	NA	DUF6273
UHGV-0054211_32	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0054211_33	PHROG	phrog_27545	NA	unknown function
UHGV-0054211_33	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0054211_33	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0054211_33	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0054211_33	Structural annotation	PF16170	NA	NA
UHGV-0054211_34	PHROG	phrog_937	hemolysin	other
UHGV-0054211_34	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0054211_36	PHROG	phrog_13256	NA	unknown function
UHGV-0054211_36	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0054211_37	PHROG	phrog_21357	endolysin	lysis
UHGV-0054211_37	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0054211_37	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0054211_37	Pfam	PF05257	CHAP domain	CHAP
UHGV-0054211_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0054211_37	Structural annotation	TIGR02594	NA	NA
UHGV-0054211_39	PHROG	phrog_3754	NA	unknown function
UHGV-0054211_39	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0054211_40	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0054211_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054211_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0054211_40	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0054211_41	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0054211_41	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0054211_42	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0054211_42	PHROG	phrog_19856	NA	unknown function
UHGV-0054211_42	UniRef90	UniRef90_UPI00068633D6	restriction endonuclease	NA
UHGV-0054211_42	eggNOG-mapper	1280696.ATVY01000073_gene1217	Restriction endonuclease	NA
UHGV-0054211_42	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0054211_42	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0054211_42	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0054211_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0054211_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054211_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054211_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0054211_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0054211_45	UniRef90	UniRef90_UPI001379CF69	phage antirepressor KilAC domain-containing protein	NA
UHGV-0054211_45	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0054211_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0054211_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054211_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0054211_45	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0054211_46	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0054211_46	Structural annotation	PF11112, COG3311	NA	NA