UHGV-0054383

Genome information

Genome length 35,784 bps

CDS count 57

Completeness 78.11% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054383
vOTU ID	vOTU-040117
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_39700
BioSample	SAMEA1972188
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.99
Jumbo phage	No

Genome content
Genome length	35,784 bps
GC content	52.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.62%
Average CDS length	573.63 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054383_1	KOfam	K01610	E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]	NA
UHGV-0054383_1	UniRef90	UniRef90_A0A8E0R6L3	Phosphoenolpyruvate carboxykinase (ATP) (Fragment)	NA
UHGV-0054383_1	eggNOG-mapper	411483.FAEPRAA2165_02748	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA	NA
UHGV-0054383_1	Pfam	PF01293	Phosphoenolpyruvate carboxykinase	PEPCK_ATP
UHGV-0054383_1	COG	COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	NA
UHGV-0054383_2	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0054383_2	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054383_2	UniRef90	UniRef90_A0A348T1C4	HTH_38 domain-containing protein	NA
UHGV-0054383_2	eggNOG-mapper	1203606.HMPREF1526_01866	Helix-turn-helix domain	NA
UHGV-0054383_2	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0054383_2	Structural annotation	PF13384, COG3415	NA	NA
UHGV-0054383_5	PHROG	phrog_22740	NA	unknown function
UHGV-0054383_5	UniRef90	UniRef90_A0A1Q6T6T6	Adenine methyltransferase	NA
UHGV-0054383_5	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0054383_5	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0054383_5	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0054383_5	Structural annotation	PF12237, TIGR01712	NA	NA
UHGV-0054383_6	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0054383_6	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0054383_6	UniRef90	UniRef90_A0A1Q6T6B8	Methyltransferase	NA
UHGV-0054383_6	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0054383_6	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0054383_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0054383_6	COG	COG0863	DNA modification methylase	NA
UHGV-0054383_6	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0054383_7	UniRef90	UniRef90_A0A1C6E6N1	Probable deoxyuridine 5'-triphosphate nucleotidohydrolase yncF	NA
UHGV-0054383_8	PHROG	phrog_2889	NA	unknown function
UHGV-0054383_8	UniRef90	UniRef90_A0A1Y3XM91	FGE-sulfatase domain-containing protein	NA
UHGV-0054383_8	eggNOG-mapper	411459.RUMOBE_01114	NA	NA
UHGV-0054383_8	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0054383_10	PHROG	phrog_24518	NA	unknown function
UHGV-0054383_10	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0054383_11	PHROG	phrog_874	NA	unknown function
UHGV-0054383_11	UniRef90	UniRef90_UPI000CDA362A	ASCH domain-containing protein	NA
UHGV-0054383_11	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0054383_11	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0054383_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0054383_12	UniRef90	UniRef90_UPI001C02C5E0	NA	NA
UHGV-0054383_12	eggNOG-mapper	718252.FP2_16510	NA	NA
UHGV-0054383_12	Structural annotation	PF01446	NA	NA
UHGV-0054383_14	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0054383_14	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0054383_14	UniRef90	UniRef90_UPI001C3E9EFC	hydrolase	NA
UHGV-0054383_14	eggNOG-mapper	1408437.JNJN01000035_gene1812	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0054383_14	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0054383_14	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0054383_15	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054383_15	UniRef90	UniRef90_A0A6I2QZA6	NA	NA
UHGV-0054383_15	eggNOG-mapper	936573.HMPREF1147_1709	NA	NA
UHGV-0054383_15	Pfam	PF06356	NA	DUF1064
UHGV-0054383_15	Structural annotation	PF06356, MF_04160, NF002584	NA	NA
UHGV-0054383_17	PHROG	phrog_24484	NA	unknown function
UHGV-0054383_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054383_18	UniRef90	UniRef90_A0A3D2IBG9	Sigma70_r4_2 domain-containing protein	NA
UHGV-0054383_18	eggNOG-mapper	748224.HMPREF9436_03087	NA	NA
UHGV-0054383_18	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0054383_18	Structural annotation	PF06530, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0054383_24	PHROG	phrog_13590	kinase	other
UHGV-0054383_24	UniRef90	UniRef90_A0A2K9V3W7	Ribokinase	NA
UHGV-0054383_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0054383_26	PHROG	phrog_7698	endolysin	lysis
UHGV-0054383_26	UniRef90	UniRef90_A0A2A7B967	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0054383_26	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0054383_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0054383_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0054383_26	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG3807	NA	NA
UHGV-0054383_28	PHROG	phrog_17876	NA	unknown function
UHGV-0054383_28	eggNOG-mapper	1226322.HMPREF1545_04026	NA	NA
UHGV-0054383_29	PHROG	phrog_4105	NA	unknown function
UHGV-0054383_29	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0054383_30	PHROG	phrog_29409	NA	unknown function
UHGV-0054383_30	UniRef90	UniRef90_UPI001C128253	isoaspartyl peptidase	NA
UHGV-0054383_31	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0054383_31	PHROG	phrog_30034	NA	unknown function
UHGV-0054383_31	UniRef90	UniRef90_A0A2A7B8Z9	Chitinase	NA
UHGV-0054383_31	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0054383_31	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0054383_32	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0054383_32	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0054383_32	UniRef90	UniRef90_A0A173XPJ6	Retron-type reverse transcriptase	NA
UHGV-0054383_32	eggNOG-mapper	552398.HMPREF0866_03096	Reverse transcriptase	NA
UHGV-0054383_32	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0054383_32	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0054383_32	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0054383_32	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0054383_33	PHROG	phrog_30516	NA	unknown function
UHGV-0054383_33	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0054383_34	UniRef90	UniRef90_R9MSK6	Arc domain-containing protein	NA
UHGV-0054383_34	eggNOG-mapper	1235790.C805_00818	NA	NA
UHGV-0054383_34	Structural annotation	PF16777, TIGR04563, COG4877	NA	NA
UHGV-0054383_35	PHROG	phrog_37900	NA	unknown function
UHGV-0054383_35	UniRef90	UniRef90_A0A173XRY3	NA	NA
UHGV-0054383_35	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0054383_35	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0054383_35	Pfam	PF19789	NA	DUF6273
UHGV-0054383_35	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0054383_35	Structural annotation	PF19789, PF03921, MF_04116, NF033186, COG2372	NA	NA
UHGV-0054383_36	PHROG	phrog_521	tail protein	tail
UHGV-0054383_36	UniRef90	UniRef90_UPI0019D064A6	NA	NA
UHGV-0054383_36	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0054383_36	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0054383_36	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0054383_36	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0054383_37	PHROG	phrog_6	baseplate protein	tail
UHGV-0054383_37	UniRef90	UniRef90_U2ARZ3	Baseplate_J domain-containing protein	NA
UHGV-0054383_37	eggNOG-mapper	742740.HMPREF9474_02339	Baseplate J-like protein	NA
UHGV-0054383_37	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0054383_37	COG	COG3299	NA	NA
UHGV-0054383_37	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-0054383_38	PHROG	phrog_120	baseplate protein	tail
UHGV-0054383_38	UniRef90	UniRef90_A0A658JXE2	NA	NA
UHGV-0054383_38	eggNOG-mapper	696281.Desru_1322	NA	NA
UHGV-0054383_38	Pfam	PF10934	NA	DUF2634
UHGV-0054383_38	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0054383_38	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0054383_39	PHROG	phrog_579	NA	unknown function
UHGV-0054383_39	UniRef90	UniRef90_A0A658K4I0	NA	NA
UHGV-0054383_39	eggNOG-mapper	1347368.HG964405_gene5701	NA	NA
UHGV-0054383_39	Pfam	PF10844	NA	DUF2577
UHGV-0054383_39	Structural annotation	PF10844	NA	NA
UHGV-0054383_40	PHROG	phrog_400	tail protein	tail
UHGV-0054383_40	UniRef90	UniRef90_A0A2A7B946	Hydrolase	NA
UHGV-0054383_40	eggNOG-mapper	696281.Desru_1320	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0054383_40	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0054383_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0054383_41	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0054383_41	PHROG	phrog_380	endolysin	lysis
UHGV-0054383_41	UniRef90	UniRef90_A0A2A7B8Z0	LysM domain-containing protein	NA
UHGV-0054383_41	eggNOG-mapper	608534.GCWU000341_02281	PFAM LysM domain	NA
UHGV-0054383_41	Pfam	PF01476	LysM domain	LysM
UHGV-0054383_41	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0054383_41	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0054383_42	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0054383_42	UniRef90	UniRef90_A0A2A7B8Y8	Phage tail tape measure protein	NA
UHGV-0054383_42	eggNOG-mapper	1203606.HMPREF1526_00335	tape measure	NA
UHGV-0054383_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0054383_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0054383_42	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0054383_42	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0054383_43	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0054383_43	UniRef90	UniRef90_A0A2A7B952	Phage portal protein	NA
UHGV-0054383_43	eggNOG-mapper	1163671.JAGI01000002_gene2850	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0054383_43	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0054383_43	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0054383_44	PHROG	phrog_365	tail protein	tail
UHGV-0054383_44	UniRef90	UniRef90_A0A173XSG5	Phage-like element PBSX protein xkdM	NA
UHGV-0054383_44	eggNOG-mapper	642492.Clole_2749	Phage tail tube protein	NA
UHGV-0054383_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0054383_44	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0054383_45	PHROG	phrog_279	tail sheath	tail
UHGV-0054383_45	UniRef90	UniRef90_A0A2A7B948	Phage tail protein	NA
UHGV-0054383_45	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0054383_45	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0054383_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0054383_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0054383_45	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0054383_46	PHROG	phrog_966	NA	unknown function
UHGV-0054383_46	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0054383_47	PHROG	phrog_525	NA	unknown function
UHGV-0054383_47	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0054383_47	eggNOG-mapper	1582156.A0A0A8WJT3_9CAUD	NA	NA
UHGV-0054383_47	Pfam	PF20765	NA	DUF6838
UHGV-0054383_47	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0054383_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054383_48	UniRef90	UniRef90_UPI001C0F85E8	HK97 gp10 family phage protein	NA
UHGV-0054383_48	eggNOG-mapper	608534.GCWU000341_02289	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0054383_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0054383_48	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0054383_49	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0054383_49	UniRef90	UniRef90_T3D9B6	Putative phage protein	NA
UHGV-0054383_49	eggNOG-mapper	1151292.QEW_3498	NA	NA
UHGV-0054383_49	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0054383_50	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0054383_50	eggNOG-mapper	1203606.HMPREF1526_00326	NA	NA
UHGV-0054383_50	Structural annotation	PF05135	NA	NA
UHGV-0054383_51	PHROG	phrog_544	major head protein	head and packaging
UHGV-0054383_51	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0054383_51	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0054383_51	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0054383_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0054383_52	UniRef90	UniRef90_UPI0011DDD0C5	phage scaffolding protein	NA
UHGV-0054383_52	eggNOG-mapper	1203606.HMPREF1526_00324	Phage minor structural protein GP20	NA
UHGV-0054383_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0054383_52	Structural annotation	PF06810	NA	NA
UHGV-0054383_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0054383_53	UniRef90	UniRef90_A0A2A7B941	Bro-N domain-containing protein	NA
UHGV-0054383_53	eggNOG-mapper	742738.HMPREF9460_02498	BRO family, N-terminal domain	NA
UHGV-0054383_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054383_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0054383_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0054383_53	Structural annotation	PF02498, PF13560, NF041951, COG3617, COG3655	NA	NA
UHGV-0054383_55	UniRef90	UniRef90_A0A2A7B8Y1	CopG family transcriptional regulator	NA
UHGV-0054383_55	eggNOG-mapper	1378168.N510_02331	Ribbon-helix-helix protein, copG family	NA
UHGV-0054383_55	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0054383_55	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0054383_56	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0054383_56	UniRef90	UniRef90_A0A1C6IK63	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0054383_56	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0054383_56	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0054383_56	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0054383_56	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0054383_56	COG	COG2369	NA	NA
UHGV-0054383_56	Structural annotation	PF04233, PF18809, TIGR01641, COG2369	NA	NA
UHGV-0054383_57	eggNOG-mapper	1408437.JNJN01000010_gene1274	transglutaminase	NA
UHGV-0054383_57	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA