UHGV-0054391

Genome information

Genome length 27,718 bps

CDS count 48

Completeness 73.98% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054391
vOTU ID	vOTU-023654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_67139
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.86
Jumbo phage	No

Genome content
Genome length	27,718 bps
GC content	29.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.59%
Average CDS length	528.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054391_1	KOfam	K03406	mcp; methyl-accepting chemotaxis protein	NA
UHGV-0054391_1	PHROG	phrog_8572	NA	unknown function
UHGV-0054391_1	UniRef90	UniRef90_A0A645G247	Methyl-accepting chemotaxis protein IV	NA
UHGV-0054391_1	eggNOG-mapper	632245.CLP_0568	methyl-accepting chemotaxis protein	NA
UHGV-0054391_1	Pfam	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain	MCPsignal
UHGV-0054391_1	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0054391_2	KOfam	K13487	wspA; methyl-accepting chemotaxis protein WspA	NA
UHGV-0054391_2	UniRef90	UniRef90_A0A413B1S0	HAMP domain-containing protein (Fragment)	NA
UHGV-0054391_2	eggNOG-mapper	585394.RHOM_01255	methyl-accepting chemotaxis protein	NA
UHGV-0054391_2	Pfam	PF00672	HAMP domain	HAMP
UHGV-0054391_2	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0054391_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0054391_4	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-0054391_4	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054391_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0054391_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054391_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054391_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0054391_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054391_5	UniRef90	UniRef90_A0A1Q6K3F1	HTH cro/C1-type domain-containing protein	NA
UHGV-0054391_5	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0054391_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054391_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054391_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054391_8	Structural annotation	PF06114	NA	NA
UHGV-0054391_9	PHROG	phrog_87	metallo-protease	other
UHGV-0054391_9	UniRef90	UniRef90_A0A0A3J8Z5	Membrane protein	NA
UHGV-0054391_9	eggNOG-mapper	1220589.CD32_16955	Zn peptidase	NA
UHGV-0054391_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0054391_10	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0054391_10	PHROG	phrog_95	integrase	integration and excision
UHGV-0054391_10	UniRef90	UniRef90_R6Y141	Site-specific recombinase DNA invertase Pin	NA
UHGV-0054391_10	eggNOG-mapper	1094508.Tsac_0903	Resolvase, N terminal domain	NA
UHGV-0054391_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0054391_10	Pfam	PF07508	Recombinase	Recombinase
UHGV-0054391_10	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0054391_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0054391_10	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0054391_11	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0054391_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054391_15	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0054391_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0054391_16	PHROG	phrog_35436	amidase	lysis
UHGV-0054391_16	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0054391_16	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0054391_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0054391_16	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0054391_16	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0054391_16	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0054391_17	PHROG	phrog_199	holin	lysis
UHGV-0054391_17	UniRef90	UniRef90_UPI00085C2E64	phage holin family protein	NA
UHGV-0054391_17	eggNOG-mapper	411902.CLOBOL_03863	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0054391_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0054391_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0054391_17	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0054391_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0054391_20	PHROG	phrog_13879	NA	unknown function
UHGV-0054391_20	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0054391_20	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0054391_21	PHROG	phrog_1194	NA	unknown function
UHGV-0054391_21	eggNOG-mapper	1229517.AMFD01000023_gene1305	NA	NA
UHGV-0054391_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0054391_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0054391_22	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0054391_22	COG	COG1511	NA	NA
UHGV-0054391_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0054391_23	eggNOG-mapper	691966.D4P728_9CAUD	peptidoglycan catabolic process	NA
UHGV-0054391_25	PHROG	phrog_11491	NA	unknown function
UHGV-0054391_25	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-0054391_25	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-0054391_25	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0054391_25	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0054391_27	Structural annotation	PF12363	NA	NA
UHGV-0054391_28	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0054391_29	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0054391_29	Structural annotation	PF05657	NA	NA
UHGV-0054391_30	Structural annotation	TIGR01725	NA	NA
UHGV-0054391_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0054391_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0054391_33	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0054391_33	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0054391_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0054391_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0054391_33	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054391_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0054391_34	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0054391_34	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0054391_34	Pfam	PF14265	NA	DUF4355
UHGV-0054391_34	Structural annotation	PF14265	NA	NA
UHGV-0054391_37	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0054391_37	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0054391_37	COG	COG2369	NA	NA
UHGV-0054391_37	Structural annotation	TIGR01641	NA	NA
UHGV-0054391_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0054391_38	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0054391_38	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054391_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054391_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0054391_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0054391_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0054391_39	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0054391_39	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0054391_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0054391_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0054391_39	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0054391_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0054391_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0054391_40	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0054391_40	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0054391_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0054391_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0054391_40	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0054391_41	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0054391_41	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0054391_41	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0054391_41	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0054391_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0054391_41	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0054391_41	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0054391_43	PHROG	phrog_1233	NA	unknown function
UHGV-0054391_43	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0054391_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0054391_43	Structural annotation	PF13058	NA	NA
UHGV-0054391_46	PHROG	phrog_1090	NA	unknown function
UHGV-0054391_46	UniRef90	UniRef90_UPI001F4D796E	SinR family protein	NA
UHGV-0054391_46	eggNOG-mapper	324057.Pjdr2_1651	NA	NA