UHGV-0054459

Genome information

Genome length 35,488 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054459
vOTU ID	vOTU-007549
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_60523
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.57
Jumbo phage	No

Genome content
Genome length	35,488 bps
GC content	56.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.24%
Average CDS length	505.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054459_1	UniRef90	UniRef90_UPI001C2618C7	helix-turn-helix domain-containing protein	NA
UHGV-0054459_1	eggNOG-mapper	411483.FAEPRAA2165_00452	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0054459_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0054459_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0054459_2	UniRef90	UniRef90_A0A6N7TPW9	NA	NA
UHGV-0054459_2	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0054459_2	Pfam	PF05339	NA	DUF739
UHGV-0054459_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0054459_2	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0054459_3	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0054459_3	UniRef90	UniRef90_UPI00122C4EA8	DnaD domain protein	NA
UHGV-0054459_3	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0054459_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054459_3	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0054459_4	Structural annotation	PF11417	NA	NA
UHGV-0054459_10	UniRef90	UniRef90_UPI001C256433	NA	NA
UHGV-0054459_10	Pfam	PF14265	NA	DUF4355
UHGV-0054459_10	Structural annotation	PF14265	NA	NA
UHGV-0054459_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0054459_11	eggNOG-mapper	397290.C810_03456	NA	NA
UHGV-0054459_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0054459_12	UniRef90	UniRef90_A0A072YS21	Chromosome segregation protein SMC	NA
UHGV-0054459_12	eggNOG-mapper	476272.RUMHYD_03602	NA	NA
UHGV-0054459_12	AcrCatalog	cluster_8902	NA	NA
UHGV-0054459_12	Structural annotation	PF10944	NA	NA
UHGV-0054459_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0054459_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0054459_13	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-0054459_13	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0054459_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0054459_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0054459_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0054459_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0054459_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0054459_15	PHROG	phrog_15303	NA	unknown function
UHGV-0054459_16	PHROG	phrog_9428	NA	unknown function
UHGV-0054459_16	UniRef90	UniRef90_A0A6I2R426	Serine/threonine protein kinase	NA
UHGV-0054459_16	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0054459_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0054459_17	PHROG	phrog_291	endolysin	lysis
UHGV-0054459_17	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0054459_17	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0054459_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054459_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0054459_17	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0054459_18	PHROG	phrog_28526	NA	unknown function
UHGV-0054459_18	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0054459_18	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-0054459_20	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0054459_20	COG	COG5492	NA	NA
UHGV-0054459_21	PHROG	phrog_9534	head protein	head and packaging
UHGV-0054459_21	UniRef90	UniRef90_A0A2Z5Z725	Putative baseplate protein	NA
UHGV-0054459_21	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0054459_21	Structural annotation	PF20747	NA	NA
UHGV-0054459_22	PHROG	phrog_538	minor tail protein	tail
UHGV-0054459_22	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0054459_22	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0054459_22	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0054459_22	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0054459_23	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0054459_25	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0054459_25	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0054459_25	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0054459_25	COG	COG1511	NA	NA
UHGV-0054459_26	Structural annotation	PF17318	NA	NA
UHGV-0054459_27	PHROG	phrog_1526	NA	unknown function
UHGV-0054459_27	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0054459_28	PHROG	phrog_117	major tail protein	tail
UHGV-0054459_28	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0054459_28	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0054459_28	COG	COG5492	NA	NA
UHGV-0054459_28	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0054459_29	PHROG	phrog_123	tail terminator	connector
UHGV-0054459_29	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0054459_29	Structural annotation	PF06141	NA	NA
UHGV-0054459_30	PHROG	phrog_387	neck protein	connector
UHGV-0054459_30	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0054459_30	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0054459_31	PHROG	phrog_501	head closure Hc1	connector
UHGV-0054459_31	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0054459_31	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0054459_31	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0054459_32	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0054459_32	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0054459_32	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0054459_32	Pfam	PF09355	NA	Phage_Gp19
UHGV-0054459_32	Structural annotation	PF09355	NA	NA
UHGV-0054459_34	PHROG	phrog_32396	NA	unknown function
UHGV-0054459_34	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0054459_34	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0054459_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054459_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054459_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054459_35	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0054459_35	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0054459_35	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0054459_35	Structural annotation	PF14265	NA	NA
UHGV-0054459_36	PHROG	phrog_17688	NA	unknown function
UHGV-0054459_36	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0054459_36	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0054459_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054459_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054459_36	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0054459_37	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0054459_37	UniRef90	UniRef90_A0A1C5Y960	CdiA_C domain-containing protein	NA
UHGV-0054459_37	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0054459_37	COG	COG2369	NA	NA
UHGV-0054459_37	Structural annotation	PF18451	NA	NA
UHGV-0054459_38	PHROG	phrog_104	portal protein	head and packaging
UHGV-0054459_38	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054459_38	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054459_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054459_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0054459_39	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054459_39	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-0054459_39	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0054459_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0054459_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054459_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054459_40	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0054459_40	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0054459_40	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0054459_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0054459_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0054459_43	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0054459_43	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0054459_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0054459_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0054459_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0054459_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0054459_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0054459_44	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0054459_44	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0054459_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0054459_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054459_44	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0054459_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054459_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054459_45	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0054459_45	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0054459_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054459_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0054459_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054459_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0054459_45	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0054459_46	PHROG	phrog_7566	NA	unknown function
UHGV-0054459_46	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0054459_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0054459_47	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0054459_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0054459_48	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0054459_49	Structural annotation	NF033787	NA	NA
UHGV-0054459_56	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0054459_58	PHROG	phrog_37789	NA	unknown function
UHGV-0054459_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054459_60	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0054459_61	PHROG	phrog_3777	NA	unknown function
UHGV-0054459_61	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0054459_61	Pfam	PF12957	NA	DUF3846
UHGV-0054459_61	Structural annotation	PF12957	NA	NA
UHGV-0054459_65	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA