UHGV-0054492

Genome information

Genome length 35,687 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054492
vOTU ID	vOTU-010136
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_46802
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.76
Jumbo phage	No

Genome content
Genome length	35,687 bps
GC content	40.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.56%
Average CDS length	563.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054492_1	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0054492_1	UniRef90	UniRef90_Q58WV6	2-methylthioadenine synthetase	NA
UHGV-0054492_1	eggNOG-mapper	537007.BLAHAN_04736	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0054492_1	Pfam	PF00919	NA	UPF0004
UHGV-0054492_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0054492_2	PHROG	phrog_13890	NA	unknown function
UHGV-0054492_2	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0054492_2	eggNOG-mapper	877414.ATWA01000049_gene449	NA	NA
UHGV-0054492_2	Pfam	PF09274	ParG	ParG
UHGV-0054492_4	PHROG	phrog_199	holin	lysis
UHGV-0054492_4	UniRef90	UniRef90_A0A349YRM9	Holin	NA
UHGV-0054492_4	eggNOG-mapper	411468.CLOSCI_00532	toxin secretion phage lysis holin	NA
UHGV-0054492_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0054492_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0054492_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0054492_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0054492_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0054492_5	PHROG	phrog_291	endolysin	lysis
UHGV-0054492_5	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0054492_5	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0054492_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054492_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0054492_5	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0054492_8	PHROG	phrog_24103	NA	unknown function
UHGV-0054492_8	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0054492_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0054492_9	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0054492_10	PHROG	phrog_15594	NA	unknown function
UHGV-0054492_10	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0054492_10	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0054492_11	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0054492_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0054492_12	PHROG	phrog_11037	NA	unknown function
UHGV-0054492_12	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0054492_12	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0054492_12	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0054492_12	Structural annotation	PF18013	NA	NA
UHGV-0054492_13	PHROG	phrog_13289	tail protein	tail
UHGV-0054492_13	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0054492_13	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0054492_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0054492_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0054492_13	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0054492_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0054492_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0054492_14	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0054492_14	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0054492_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0054492_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0054492_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0054492_15	PHROG	phrog_23464	NA	unknown function
UHGV-0054492_15	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0054492_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0054492_17	PHROG	phrog_88	major tail protein	tail
UHGV-0054492_17	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0054492_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0054492_17	COG	COG5492	NA	NA
UHGV-0054492_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0054492_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054492_18	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0054492_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0054492_18	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0054492_19	Structural annotation	PF05657	NA	NA
UHGV-0054492_20	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0054492_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054492_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054492_22	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0054492_22	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0054492_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054492_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054492_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0054492_22	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0054492_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0054492_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0054492_23	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0054492_23	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0054492_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0054492_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0054492_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0054492_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054492_24	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0054492_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0054492_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054492_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054492_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054492_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054492_25	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0054492_25	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0054492_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0054492_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054492_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054492_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0054492_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0054492_26	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0054492_26	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0054492_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0054492_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0054492_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0054492_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054492_27	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0054492_27	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0054492_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0054492_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054492_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054492_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0054492_28	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-0054492_28	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0054492_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0054492_29	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0054492_29	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0054492_29	Structural annotation	PF21578	NA	NA
UHGV-0054492_33	PHROG	phrog_8684	NA	unknown function
UHGV-0054492_33	UniRef90	UniRef90_A0A417PEY2	YopX domain-containing protein	NA
UHGV-0054492_33	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0054492_33	Pfam	PF09643	YopX protein	YopX
UHGV-0054492_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054492_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054492_34	PHROG	phrog_874	NA	unknown function
UHGV-0054492_34	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0054492_34	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0054492_36	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0054492_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0054492_36	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-0054492_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0054492_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0054492_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0054492_36	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0054492_38	PHROG	phrog_15077	NA	unknown function
UHGV-0054492_38	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0054492_38	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-0054492_38	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0054492_39	PHROG	phrog_8470	NA	unknown function
UHGV-0054492_39	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-0054492_39	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0054492_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0054492_39	Structural annotation	PF14284	NA	NA
UHGV-0054492_40	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0054492_41	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0054492_41	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0054492_44	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0054492_45	PHROG	phrog_585	NA	unknown function
UHGV-0054492_45	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-0054492_45	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0054492_45	Pfam	PF10711	NA	DUF2513
UHGV-0054492_45	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0054492_47	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0054492_51	UniRef90	UniRef90_A0A0M6WGZ2	HTH_7 domain-containing protein	NA
UHGV-0054492_51	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0054492_51	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0054492_51	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0054492_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0054492_52	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0054492_52	UniRef90	UniRef90_A0A0M6WGY8	HTH cro/C1-type domain-containing protein	NA
UHGV-0054492_52	eggNOG-mapper	642492.Clole_2801	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054492_52	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0054492_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054492_52	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0054492_54	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0054492_54	UniRef90	UniRef90_A0A5Q2SAY6	Abi family protein	NA
UHGV-0054492_54	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0054492_54	PADLOC	AbiD	AbiD	Abi
UHGV-0054492_54	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0054492_54	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0054492_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0054492_55	UniRef90	UniRef90_UPI000E5D2F29	Abi family protein	NA
UHGV-0054492_55	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0054492_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0054492_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0054492_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0054492_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0054492_56	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-0054492_56	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0054492_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0054492_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0054492_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0054492_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0054492_56	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0054492_57	eggNOG-mapper	763034.HMPREF9446_03032	NA	NA