UHGV-0054516

Genome information

Genome length 28,826 bps

CDS count 53

Completeness 78.15% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054516
vOTU ID	vOTU-026285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_58299
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.41
Jumbo phage	No

Genome content
Genome length	28,826 bps
GC content	28.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.15%
Average CDS length	506.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054516_2	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-0054516_4	PHROG	phrog_297	holin	lysis
UHGV-0054516_4	UniRef90	UniRef90_R5KJ92	CHAP domain./Lectin C-type domain	NA
UHGV-0054516_4	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0054516_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0054516_4	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0054516_4	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-0054516_5	Structural annotation	PF06946	NA	NA
UHGV-0054516_10	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0054516_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0054516_12	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0054516_12	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0054516_13	eggNOG-mapper	1416752.AYME01000008_gene3375	Beta-galactosidase	NA
UHGV-0054516_13	COG	COG1874	Beta-galactosidase GanA	NA
UHGV-0054516_16	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0054516_16	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0054516_17	Structural annotation	PF20747	NA	NA
UHGV-0054516_18	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0054516_18	eggNOG-mapper	936574.HMPREF1508_2015	Hydrolase Family 25	NA
UHGV-0054516_18	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0054516_18	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0054516_18	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-0054516_19	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0054516_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0054516_21	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0054516_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0054516_21	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0054516_21	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0054516_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0054516_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0054516_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0054516_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0054516_23	PHROG	phrog_709	NA	unknown function
UHGV-0054516_23	Structural annotation	PF11836	NA	NA
UHGV-0054516_24	PHROG	phrog_88	major tail protein	tail
UHGV-0054516_24	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-0054516_24	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0054516_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0054516_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0054516_25	eggNOG-mapper	1145276.T479_12220	NA	NA
UHGV-0054516_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0054516_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054516_26	UniRef90	UniRef90_A0A0F4VPW6	NA	NA
UHGV-0054516_26	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0054516_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0054516_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0054516_27	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0054516_27	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-0054516_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054516_28	PHROG	phrog_5223	neck protein	connector
UHGV-0054516_28	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0054516_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054516_29	UniRef90	UniRef90_A0A1W2AS24	Phage major capsid protein, HK97 family	NA
UHGV-0054516_29	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0054516_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054516_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054516_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054516_30	KOfam	K06904	NA	NA
UHGV-0054516_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0054516_30	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0054516_30	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0054516_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0054516_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0054516_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0054516_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0054516_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054516_31	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0054516_31	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0054516_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054516_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054516_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054516_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054516_32	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0054516_32	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0054516_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0054516_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054516_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054516_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0054516_33	PHROG	phrog_1066	NA	unknown function
UHGV-0054516_33	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0054516_33	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0054516_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0054516_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054516_36	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-0054516_36	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-0054516_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0054516_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054516_36	Structural annotation	NF008448	NA	NA
UHGV-0054516_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054516_39	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0054516_43	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0054516_44	PHROG	phrog_8684	NA	unknown function
UHGV-0054516_44	UniRef90	UniRef90_I8VZD7	YopX domain-containing protein	NA
UHGV-0054516_44	eggNOG-mapper	619693.HMPREF6745_2499	YopX protein	NA
UHGV-0054516_44	Pfam	PF09643	YopX protein	YopX
UHGV-0054516_44	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054516_44	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054516_49	eggNOG-mapper	626522.GCWU000325_01760	NA	NA
UHGV-0054516_49	Pfam	PF20137	NA	DUF6527
UHGV-0054516_49	Structural annotation	PF20137	NA	NA
UHGV-0054516_51	Structural annotation	PF02996, COG1382	NA	NA