UHGV-0054525

Genome information

Genome length 29,806 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054525
vOTU ID	vOTU-044989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31189
BioSample	SAMEA2152521
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.64
Jumbo phage	No

Genome content
Genome length	29,806 bps
GC content	31.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.48%
Average CDS length	539.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054525_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0054525_2	PHROG	phrog_291	endolysin	lysis
UHGV-0054525_2	UniRef90	UniRef90_UPI0018E40569	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0054525_2	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0054525_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054525_2	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0054525_2	Pfam	PF01476	LysM domain	LysM
UHGV-0054525_2	COG	COG1388	LysM repeat	NA
UHGV-0054525_2	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0054525_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0054525_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0054525_3	UniRef90	UniRef90_R6HPK6	Resolvase	NA
UHGV-0054525_3	eggNOG-mapper	537013.CLOSTMETH_01633	Resolvase, N terminal domain	NA
UHGV-0054525_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0054525_3	Pfam	PF01476	LysM domain	LysM
UHGV-0054525_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0054525_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0054525_3	Structural annotation	PF07508, PF00239, PF05384, NF041201, COG1961	NA	NA
UHGV-0054525_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0054525_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054525_4	UniRef90	UniRef90_R6H2Y2	Transcriptional regulator Cro/CI family	NA
UHGV-0054525_4	eggNOG-mapper	1235801.C822_00419	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054525_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054525_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054525_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0054525_5	UniRef90	UniRef90_A0A1B1YAB3	HTH cro/C1-type domain-containing protein	NA
UHGV-0054525_5	eggNOG-mapper	1131462.DCF50_p1826	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054525_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054525_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0054525_8	PHROG	phrog_16304	NA	unknown function
UHGV-0054525_8	eggNOG-mapper	1384065.JAGS01000001_gene1055	NA	NA
UHGV-0054525_8	Pfam	PF19808	NA	DUF6291
UHGV-0054525_8	Structural annotation	PF19808	NA	NA
UHGV-0054525_9	PHROG	phrog_322	NA	unknown function
UHGV-0054525_9	UniRef90	UniRef90_UPI0011A406FC	Gp49 family protein	NA
UHGV-0054525_9	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0054525_9	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0054525_9	dbAPIS	APIS043	NA	NA
UHGV-0054525_9	Structural annotation	PF13876	NA	NA
UHGV-0054525_10	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0054525_10	PHROG	phrog_27338	NA	unknown function
UHGV-0054525_10	UniRef90	UniRef90_R6SU83	Putative septation protein SpoVG	NA
UHGV-0054525_10	eggNOG-mapper	944479.JQLX01000014_gene1539	SpoVG	NA
UHGV-0054525_10	Pfam	PF04026	SpoVG	SpoVG
UHGV-0054525_10	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0054525_10	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0054525_11	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054525_11	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0054525_11	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0054525_11	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0054525_11	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0054525_14	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0054525_14	PHROG	phrog_216	integrase	integration and excision
UHGV-0054525_14	UniRef90	UniRef90_R6TR31	Site-specific recombinase phage integrase family	NA
UHGV-0054525_14	eggNOG-mapper	706433.HMPREF9430_01277	DNA integration	NA
UHGV-0054525_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0054525_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0054525_14	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0054525_15	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0054525_15	UniRef90	UniRef90_UPI001624FD69	sugar-phosphate nucleotidyltransferase	NA
UHGV-0054525_15	eggNOG-mapper	1458856.A0A059T5F9_9CAUD	methyltransferase activity	NA
UHGV-0054525_15	Structural annotation	PF05869, MF_01872, TIGR01712, COG2263	NA	NA
UHGV-0054525_21	Structural annotation	PF01485	NA	NA
UHGV-0054525_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054525_26	UniRef90	UniRef90_R6SME5	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-0054525_26	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0054525_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0054525_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0054525_26	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0054525_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054525_27	UniRef90	UniRef90_R6T084	HNH domain-containing protein	NA
UHGV-0054525_27	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0054525_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054525_29	PHROG	phrog_1066	NA	unknown function
UHGV-0054525_29	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0054525_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0054525_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054525_30	UniRef90	UniRef90_R6SUA2	Terminase	NA
UHGV-0054525_30	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0054525_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0054525_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054525_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054525_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0054525_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054525_31	UniRef90	UniRef90_R6SME9	Phage portal protein HK97 family	NA
UHGV-0054525_31	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0054525_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054525_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054525_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054525_32	KOfam	K06904	NA	NA
UHGV-0054525_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0054525_32	UniRef90	UniRef90_R6TR51	Phage prohead protease HK97 family	NA
UHGV-0054525_32	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0054525_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0054525_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0054525_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0054525_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054525_33	UniRef90	UniRef90_R6SUA7	Phage major capsid protein HK97 family	NA
UHGV-0054525_33	eggNOG-mapper	1094508.Tsac_2424	Phage capsid family	NA
UHGV-0054525_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054525_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054525_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0054525_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054525_35	PHROG	phrog_5223	neck protein	connector
UHGV-0054525_35	UniRef90	UniRef90_R6T093	Putative phage DNA packaging-like protein	NA
UHGV-0054525_35	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0054525_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0054525_36	UniRef90	UniRef90_R6TR55	Prophage pi2 protein	NA
UHGV-0054525_36	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0054525_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0054525_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054525_37	Structural annotation	TIGR01725	NA	NA
UHGV-0054525_38	PHROG	phrog_957	head protein	head and packaging
UHGV-0054525_38	Structural annotation	PF11367	NA	NA
UHGV-0054525_39	PHROG	phrog_885	major tail protein	tail
UHGV-0054525_39	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0054525_39	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0054525_42	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0054525_42	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-0054525_42	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0054525_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0054525_42	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0054525_43	PHROG	phrog_36410	NA	unknown function
UHGV-0054525_43	UniRef90	UniRef90_R6SIV1	Conserved domain protein	NA
UHGV-0054525_43	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0054525_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0054525_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0054525_43	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0054525_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0054525_44	UniRef90	UniRef90_A0A174XET9	Phage-like protein	NA
UHGV-0054525_44	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0054525_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0054525_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0054525_45	PHROG	phrog_1220	head protein	head and packaging
UHGV-0054525_45	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0054525_45	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0054525_45	Structural annotation	PF20747	NA	NA
UHGV-0054525_46	PHROG	phrog_5302	tail protein	tail
UHGV-0054525_46	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0054525_46	eggNOG-mapper	935948.KE386495_gene1318	NA	NA
UHGV-0054525_46	Structural annotation	COG1262	NA	NA
UHGV-0054525_47	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0054525_47	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0054525_47	UniRef90	UniRef90_A0A264W1H2	Reverse transcriptase domain-containing protein	NA
UHGV-0054525_47	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0054525_47	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0054525_47	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0054525_47	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0054525_48	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0054525_48	UniRef90	UniRef90_A0A843GPS8	Phage tail assembly chaperone	NA
UHGV-0054525_48	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0054525_48	Structural annotation	PF16778	NA	NA
UHGV-0054525_49	UniRef90	UniRef90_A0A4Q5C6B7	Branched-chain amino acid ABC transporter permease	NA
UHGV-0054525_49	eggNOG-mapper	665950.HMPREF1025_02515	NA	NA