UHGV-0054648

Genome information

Genome length 39,069 bps

CDS count 67

Completeness 96.77% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054648
vOTU ID	vOTU-077180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_33457
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.49
Jumbo phage	No

Genome content
Genome length	39,069 bps
GC content	54.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.13%
Average CDS length	541.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054648_4	PHROG	phrog_16490	NA	unknown function
UHGV-0054648_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0054648_5	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0054648_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0054648_7	KOfam	K14059	int; integrase	NA
UHGV-0054648_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0054648_7	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0054648_7	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0054648_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0054648_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0054648_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0054648_8	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0054648_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054648_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0054648_8	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054648_12	eggNOG-mapper	1536770.R50345_07130	NA	NA
UHGV-0054648_12	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0054648_14	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0054648_14	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0054648_14	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0054648_18	PHROG	phrog_3136	NA	unknown function
UHGV-0054648_18	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0054648_18	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0054648_18	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0054648_18	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0054648_22	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0054648_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0054648_23	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0054648_23	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0054648_26	PHROG	phrog_7566	NA	unknown function
UHGV-0054648_26	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0054648_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054648_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054648_27	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0054648_27	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0054648_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054648_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0054648_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054648_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0054648_27	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0054648_28	PHROG	phrog_6969	NA	unknown function
UHGV-0054648_28	UniRef90	UniRef90_A0A810Q2S8	Replication initiator A domain-containing protein	NA
UHGV-0054648_28	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0054648_28	Pfam	PF19481	NA	DUF6017
UHGV-0054648_28	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0054648_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0054648_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0054648_30	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0054648_30	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0054648_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-0054648_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0054648_30	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0054648_31	Pfam	PF04448	NA	DUF551
UHGV-0054648_31	Structural annotation	PF04448	NA	NA
UHGV-0054648_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0054648_32	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0054648_32	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0054648_32	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0054648_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0054648_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0054648_32	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0054648_33	Structural annotation	PF04545	NA	NA
UHGV-0054648_35	PHROG	phrog_21498	NA	unknown function
UHGV-0054648_35	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-0054648_35	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0054648_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0054648_35	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0054648_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054648_38	UniRef90	UniRef90_A0A2A7AM49	HNH endonuclease	NA
UHGV-0054648_38	eggNOG-mapper	349161.Dred_2609	HNH nucleases	NA
UHGV-0054648_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054648_39	PHROG	phrog_13845	NA	unknown function
UHGV-0054648_39	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0054648_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0054648_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0054648_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054648_40	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0054648_40	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0054648_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054648_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054648_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0054648_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054648_41	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0054648_41	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0054648_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054648_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0054648_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054648_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054648_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0054648_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0054648_42	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0054648_42	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0054648_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0054648_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0054648_42	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0054648_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054648_43	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0054648_43	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0054648_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054648_43	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0054648_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054648_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0054648_43	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054648_44	PHROG	phrog_749	NA	unknown function
UHGV-0054648_44	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0054648_44	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0054648_45	PHROG	phrog_19734	NA	unknown function
UHGV-0054648_45	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0054648_45	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0054648_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054648_46	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0054648_46	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0054648_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054648_47	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0054648_47	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0054648_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0054648_47	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0054648_47	Structural annotation	TIGR01725	NA	NA
UHGV-0054648_48	PHROG	phrog_88	major tail protein	tail
UHGV-0054648_48	UniRef90	UniRef90_A0A7U9IBX1	Phage major tail protein, phi13 family	NA
UHGV-0054648_48	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0054648_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0054648_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0054648_51	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0054648_51	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0054648_51	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0054648_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0054648_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0054648_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0054648_51	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0054648_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0054648_53	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0054648_53	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-0054648_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0054648_53	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0054648_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0054648_54	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0054648_54	eggNOG-mapper	1027396.LMOSA_21510	Prophage endopeptidase tail	NA
UHGV-0054648_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0054648_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0054648_54	COG	COG4926	Phage-related protein	NA
UHGV-0054648_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0054648_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0054648_57	PHROG	phrog_291	endolysin	lysis
UHGV-0054648_57	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0054648_57	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0054648_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054648_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0054648_57	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0054648_58	PHROG	phrog_1863	NA	unknown function
UHGV-0054648_58	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0054648_59	PHROG	phrog_15303	NA	unknown function
UHGV-0054648_62	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0054648_63	UniRef90	UniRef90_A0A3D0M2U4	RHH_1 domain-containing protein	NA
UHGV-0054648_63	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0054648_63	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0054648_64	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054648_64	UniRef90	UniRef90_A0A2Z4QA49	AP2 protein	NA
UHGV-0054648_64	eggNOG-mapper	927704.SELR_12480	NA	NA