UHGV-0054734

Genome information

Genome length 57,749 bps

CDS count 102

Completeness 100.00% (complete)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054734
vOTU ID	vOTU-002778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_38686
BioSample	SAMEA2159529
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.86
Jumbo phage	No

Genome content
Genome length	57,749 bps
GC content	48.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	86.81%
Average CDS length	494.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054734_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0054734_1	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0054734_1	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0054734_2	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0054734_3	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0054734_3	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0054734_3	Pfam	PF16478	NA	DUF5055
UHGV-0054734_3	Structural annotation	PF16478	NA	NA
UHGV-0054734_4	PHROG	phrog_158	major tail protein	tail
UHGV-0054734_4	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0054734_4	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0054734_4	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0054734_5	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0054734_6	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0054734_7	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0054734_7	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0054734_8	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0054734_8	Structural annotation	TIGR01560	NA	NA
UHGV-0054734_9	PHROG	phrog_29	major head protein	head and packaging
UHGV-0054734_9	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0054734_9	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0054734_9	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0054734_9	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0054734_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0054734_12	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0054734_12	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0054734_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0054734_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0054734_14	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0054734_14	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0054734_14	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0054734_14	COG	COG5410	NA	NA
UHGV-0054734_14	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0054734_17	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0054734_17	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0054734_17	UniRef90	UniRef90_A0A3E2UAG1	Recombinase family protein	NA
UHGV-0054734_17	eggNOG-mapper	1280664.AUIX01000018_gene2067	Resolvase, N terminal domain	NA
UHGV-0054734_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0054734_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0054734_17	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0054734_18	Structural annotation	PF20075	NA	NA
UHGV-0054734_20	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0054734_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0054734_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0054734_21	UniRef90	UniRef90_A0A7Z6MPP3	ANT domain-containing protein	NA
UHGV-0054734_21	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0054734_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0054734_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054734_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0054734_21	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0054734_23	PHROG	phrog_14275	NA	unknown function
UHGV-0054734_23	UniRef90	UniRef90_A0A3S1E765	Zinc ribbon domain-containing protein	NA
UHGV-0054734_23	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0054734_23	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0054734_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054734_29	eggNOG-mapper	88870.Q9ZX24_BPMT4	NA	NA
UHGV-0054734_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0054734_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0054734_33	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0054734_33	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0054734_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0054734_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0054734_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0054734_34	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0054734_34	Pfam	PF19808	NA	DUF6291
UHGV-0054734_34	Structural annotation	PF19808	NA	NA
UHGV-0054734_35	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0054734_37	PHROG	phrog_7704	NA	unknown function
UHGV-0054734_37	UniRef90	UniRef90_A0A6G5YDC2	NA	NA
UHGV-0054734_37	Pfam	PF04448	NA	DUF551
UHGV-0054734_37	Structural annotation	NF041588	NA	NA
UHGV-0054734_38	Structural annotation	NF041588	NA	NA
UHGV-0054734_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0054734_41	PHROG	phrog_11947	NA	unknown function
UHGV-0054734_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054734_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054734_41	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0054734_46	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0054734_46	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-0054734_46	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0054734_46	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0054734_47	Structural annotation	PF16677	NA	NA
UHGV-0054734_48	Pfam	PF04448	NA	DUF551
UHGV-0054734_48	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0054734_53	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0054734_56	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0054734_56	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0054734_56	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0054734_56	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0054734_59	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0054734_59	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0054734_59	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0054734_59	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0054734_59	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0054734_59	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0054734_59	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0054734_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0054734_60	PHROG	phrog_28936	NA	unknown function
UHGV-0054734_60	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0054734_60	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0054734_61	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0054734_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0054734_61	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0054734_61	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0054734_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0054734_61	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0054734_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0054734_61	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0054734_61	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0054734_62	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0054734_62	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0054734_62	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0054734_62	Pfam	PF04404	ERF superfamily	ERF
UHGV-0054734_62	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0054734_63	PHROG	phrog_38771	NA	unknown function
UHGV-0054734_64	Structural annotation	PF14143	NA	NA
UHGV-0054734_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0054734_65	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0054734_68	Structural annotation	TIGR03826	NA	NA
UHGV-0054734_70	Structural annotation	PF10922	NA	NA
UHGV-0054734_71	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0054734_71	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0054734_71	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-0054734_71	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-0054734_71	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054734_71	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0054734_71	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0054734_72	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0054734_72	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0054734_72	Structural annotation	TIGR03070	NA	NA
UHGV-0054734_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054734_73	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0054734_73	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0054734_73	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0054734_73	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054734_74	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0054734_77	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0054734_77	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054734_78	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0054734_78	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0054734_78	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0054734_78	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0054734_78	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0054734_78	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0054734_78	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0054734_79	PHROG	phrog_7704	NA	unknown function
UHGV-0054734_79	Pfam	PF04448	NA	DUF551
UHGV-0054734_80	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0054734_80	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0054734_80	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0054734_80	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0054734_80	Pfam	PF13614	AAA domain	AAA_31
UHGV-0054734_80	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0054734_80	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0054734_81	Pfam	PF04448	NA	DUF551
UHGV-0054734_81	Structural annotation	NF041588	NA	NA
UHGV-0054734_82	Structural annotation	PF07878	NA	NA
UHGV-0054734_83	PHROG	phrog_10980	NA	unknown function
UHGV-0054734_83	UniRef90	UniRef90_G3MA20	Gp279	NA
UHGV-0054734_85	PHROG	phrog_7070	NA	unknown function
UHGV-0054734_85	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0054734_86	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0054734_87	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0054734_88	PHROG	phrog_16490	NA	unknown function
UHGV-0054734_88	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0054734_92	PHROG	phrog_15303	NA	unknown function
UHGV-0054734_94	KOfam	K07273	acm; lysozyme	NA
UHGV-0054734_94	PHROG	phrog_291	endolysin	lysis
UHGV-0054734_94	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0054734_94	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0054734_94	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0054734_94	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0054734_94	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0054734_95	Structural annotation	PF02368, NF038186	NA	NA
UHGV-0054734_96	PHROG	phrog_20274	NA	unknown function
UHGV-0054734_96	UniRef90	UniRef90_D4KC19	Predicted membrane protein	NA
UHGV-0054734_96	eggNOG-mapper	657322.FPR_21900	NA	NA
UHGV-0054734_96	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0054734_96	COG	COG4905	NA	NA
UHGV-0054734_96	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0054734_97	UniRef90	UniRef90_A0A2N0K3B0	Acyl carrier protein	NA
UHGV-0054734_97	eggNOG-mapper	693746.OBV_01640	NA	NA
UHGV-0054734_97	Structural annotation	PF14301	NA	NA
UHGV-0054734_99	PHROG	phrog_18725	NA	unknown function
UHGV-0054734_99	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0054734_100	PHROG	phrog_13879	NA	unknown function
UHGV-0054734_100	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0054734_100	Pfam	PF19789	NA	DUF6273
UHGV-0054734_100	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0054734_101	PHROG	phrog_1194	NA	unknown function
UHGV-0054734_101	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0054734_101	Pfam	PF20458	NA	DUF6711
UHGV-0054734_101	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA