UHGV-0054768

Genome information

Genome length 34,502 bps

CDS count 63

Completeness 95.44% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054768
vOTU ID	vOTU-064069
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_61601
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.16
Jumbo phage	No

Genome content
Genome length	34,502 bps
GC content	28.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	94.66%
Average CDS length	522.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054768_1	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0054768_1	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0054768_1	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0054768_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0054768_1	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0054768_1	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0054768_2	Structural annotation	PF06946	NA	NA
UHGV-0054768_6	PHROG	phrog_24103	NA	unknown function
UHGV-0054768_6	eggNOG-mapper	742742.HMPREF9452_01288	NA	NA
UHGV-0054768_8	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0054768_8	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0054768_10	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0054768_10	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0054768_11	Structural annotation	PF20747	NA	NA
UHGV-0054768_12	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0054768_12	eggNOG-mapper	502558.EGYY_09080	lysozyme activity	NA
UHGV-0054768_12	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0054768_12	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0054768_12	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-0054768_13	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0054768_13	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0054768_15	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0054768_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0054768_15	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0054768_15	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0054768_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0054768_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0054768_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0054768_17	PHROG	phrog_709	NA	unknown function
UHGV-0054768_17	Structural annotation	PF11836	NA	NA
UHGV-0054768_18	PHROG	phrog_88	major tail protein	tail
UHGV-0054768_18	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-0054768_18	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0054768_18	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0054768_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0054768_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0054768_19	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0054768_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0054768_20	UniRef90	UniRef90_A0A0F4VPW6	NA	NA
UHGV-0054768_20	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0054768_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0054768_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0054768_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0054768_21	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-0054768_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054768_22	PHROG	phrog_5223	neck protein	connector
UHGV-0054768_22	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0054768_23	PHROG	phrog_34916	tail fiber protein	tail
UHGV-0054768_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054768_24	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-0054768_24	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0054768_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054768_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054768_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054768_25	KOfam	K06904	NA	NA
UHGV-0054768_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0054768_25	UniRef90	UniRef90_A0A7C6SI26	HK97 family phage prohead protease	NA
UHGV-0054768_25	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-0054768_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0054768_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0054768_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0054768_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0054768_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054768_26	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-0054768_26	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0054768_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054768_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054768_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054768_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054768_27	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0054768_27	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0054768_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0054768_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054768_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054768_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0054768_28	PHROG	phrog_1066	NA	unknown function
UHGV-0054768_28	eggNOG-mapper	1123263.AUKY01000046_gene465	NA	NA
UHGV-0054768_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0054768_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0054768_30	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-0054768_30	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-0054768_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0054768_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054768_30	Structural annotation	NF008448	NA	NA
UHGV-0054768_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054768_34	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0054768_34	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0054768_37	PHROG	phrog_3163	NA	unknown function
UHGV-0054768_38	PHROG	phrog_918	NA	unknown function
UHGV-0054768_38	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0054768_38	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0054768_38	Pfam	PF19791	NA	DUF6275
UHGV-0054768_38	Structural annotation	PF19791	NA	NA
UHGV-0054768_44	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-0054768_46	PHROG	phrog_10079	NA	unknown function
UHGV-0054768_46	eggNOG-mapper	621372.ACIH01000214_gene1012	NA	NA
UHGV-0054768_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0054768_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0054768_50	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0054768_50	eggNOG-mapper	1304880.JAGB01000002_gene2311	Participates in initiation and elongation during chromosome replication	NA
UHGV-0054768_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0054768_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0054768_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0054768_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0054768_51	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0054768_51	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0054768_51	UniRef90	UniRef90_A0A1Q6K3H0	DnaB_2 domain-containing protein	NA
UHGV-0054768_51	eggNOG-mapper	936154.STP_1298	DnaD domain protein	NA
UHGV-0054768_51	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0054768_51	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0054768_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054768_51	Structural annotation	TIGR01714	NA	NA
UHGV-0054768_52	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0054768_52	PHROG	phrog_200	lipoprotein	other
UHGV-0054768_52	UniRef90	UniRef90_UPI001AE01263	prohibitin family protein	NA
UHGV-0054768_52	eggNOG-mapper	1461580.CCAS010000086_gene4344	COG0330 Membrane protease subunits, stomatin prohibitin homologs	NA
UHGV-0054768_52	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0054768_52	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0054768_52	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0054768_53	PHROG	phrog_7566	NA	unknown function
UHGV-0054768_53	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0054768_58	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0054768_59	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0054768_59	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0054768_59	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-0054768_59	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-0054768_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0054768_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054768_59	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054768_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0054768_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054768_60	UniRef90	UniRef90_A0A1Q6K3F1	HTH cro/C1-type domain-containing protein	NA
UHGV-0054768_60	eggNOG-mapper	632335.Calkr_0079	SMART helix-turn-helix domain protein	NA
UHGV-0054768_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054768_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0054768_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054768_62	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0054768_62	eggNOG-mapper	1408823.AXUS01000025_gene2652	NA	NA
UHGV-0054768_62	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0054768_63	KOfam	K14059	int; integrase	NA
UHGV-0054768_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0054768_63	UniRef90	UniRef90_A0A1Q6LBZ5	Tyr recombinase domain-containing protein	NA
UHGV-0054768_63	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0054768_63	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0054768_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0054768_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0054768_63	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA