UHGV-0054873

Genome information

Genome length 39,631 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0054873
vOTU ID	vOTU-014206
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63915
BioSample	SAMEA2338870
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.05
Jumbo phage	No

Genome content
Genome length	39,631 bps
GC content	28.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.38%
Average CDS length	528.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0054873_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0054873_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0054873_2	UniRef90	UniRef90_B0K4R6	Recombinase	NA
UHGV-0054873_2	eggNOG-mapper	1094508.Tsac_0903	Resolvase, N terminal domain	NA
UHGV-0054873_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0054873_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0054873_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0054873_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0054873_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0054873_3	PHROG	phrog_87	metallo-protease	other
UHGV-0054873_3	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0054873_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0054873_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0054873_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0054873_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0054873_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0054873_4	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0054873_4	eggNOG-mapper	525318.HMPREF0497_2324	transcriptional	NA
UHGV-0054873_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0054873_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054873_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0054873_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0054873_5	UniRef90	UniRef90_A0A6B0DZ74	Helix-turn-helix domain-containing protein	NA
UHGV-0054873_5	eggNOG-mapper	1399942.U3PDT3_9CAUD	sequence-specific DNA binding	NA
UHGV-0054873_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0054873_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0054873_7	PHROG	phrog_17486	NA	unknown function
UHGV-0054873_7	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0054873_9	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0054873_10	PHROG	phrog_1389	NA	unknown function
UHGV-0054873_10	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0054873_10	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0054873_11	PHROG	phrog_7566	NA	unknown function
UHGV-0054873_11	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0054873_13	PHROG	phrog_2329	NA	unknown function
UHGV-0054873_13	UniRef90	UniRef90_UPI0001A35AE8	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0054873_13	eggNOG-mapper	634994.GCWU000323_00539	NA	NA
UHGV-0054873_13	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-0054873_16	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0054873_16	UniRef90	UniRef90_UPI00164B51D6	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0054873_16	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0054873_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0054873_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0054873_16	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0054873_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0054873_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0054873_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0054873_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0054873_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0054873_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0054873_18	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0054873_18	eggNOG-mapper	521460.Athe_0882	Participates in initiation and elongation during chromosome replication	NA
UHGV-0054873_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0054873_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0054873_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0054873_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0054873_20	PHROG	phrog_1123	NA	unknown function
UHGV-0054873_20	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0054873_20	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0054873_21	Structural annotation	PF15188	NA	NA
UHGV-0054873_22	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0054873_22	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0054873_22	UniRef90	UniRef90_A0A424N484	DNA methyltransferase	NA
UHGV-0054873_22	eggNOG-mapper	1235800.C819_00509	MT-A70	NA
UHGV-0054873_22	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0054873_22	Pfam	PF05063	MT-A70	MT-A70
UHGV-0054873_22	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0054873_22	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0054873_23	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0054873_24	PHROG	phrog_8684	NA	unknown function
UHGV-0054873_24	UniRef90	UniRef90_R7FK73	YopX domain-containing protein	NA
UHGV-0054873_24	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0054873_24	Pfam	PF09643	YopX protein	YopX
UHGV-0054873_24	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0054873_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0054873_29	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-0054873_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0054873_30	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0054873_30	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0054873_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0054873_31	eggNOG-mapper	1121871.AUAT01000030_gene1019	NA	NA
UHGV-0054873_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0054873_31	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0054873_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0054873_34	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-0054873_34	eggNOG-mapper	457405.FSDG_01580	transposase activity	NA
UHGV-0054873_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0054873_34	Structural annotation	PF07141	NA	NA
UHGV-0054873_35	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0054873_35	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0054873_35	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0054873_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0054873_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0054873_35	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0054873_36	PHROG	phrog_1066	NA	unknown function
UHGV-0054873_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0054873_38	UniRef90	UniRef90_A0A6N2XFJ0	Phage Terminase	NA
UHGV-0054873_38	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0054873_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0054873_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0054873_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0054873_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0054873_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0054873_40	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0054873_40	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0054873_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0054873_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0054873_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0054873_41	PHROG	phrog_11491	NA	unknown function
UHGV-0054873_41	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-0054873_41	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-0054873_41	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0054873_42	UniRef90	UniRef90_A0A8J8ME07	CopG family transcriptional regulator	NA
UHGV-0054873_42	eggNOG-mapper	1105031.HMPREF1141_3283	NA	NA
UHGV-0054873_42	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0054873_45	PHROG	phrog_7940	NA	unknown function
UHGV-0054873_45	UniRef90	UniRef90_A0A7G6E7X2	Phage repressor protein	NA
UHGV-0054873_45	eggNOG-mapper	1449126.JQKL01000006_gene832	BRO family, N-terminal domain	NA
UHGV-0054873_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0054873_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0054873_45	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0054873_46	KOfam	K06904	NA	NA
UHGV-0054873_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0054873_46	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0054873_46	eggNOG-mapper	293826.Amet_2413	Phage prohead protease, HK97 family	NA
UHGV-0054873_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0054873_46	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0054873_46	COG	COG3740	Phage head maturation protease	NA
UHGV-0054873_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0054873_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-0054873_47	UniRef90	UniRef90_A0A6N2XDQ6	Phage capsid family protein	NA
UHGV-0054873_47	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0054873_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0054873_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0054873_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0054873_47	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0054873_49	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0054873_49	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0054873_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0054873_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0054873_50	UniRef90	UniRef90_A0A6N7SSZ0	Head-tail adaptor protein	NA
UHGV-0054873_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0054873_51	Structural annotation	TIGR01725	NA	NA
UHGV-0054873_52	Structural annotation	PF05657	NA	NA
UHGV-0054873_53	PHROG	phrog_88	major tail protein	tail
UHGV-0054873_53	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0054873_53	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0054873_53	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0054873_55	PHROG	phrog_5218	NA	unknown function
UHGV-0054873_55	UniRef90	UniRef90_A0A415G8B3	PhageMin_Tail domain-containing protein	NA
UHGV-0054873_55	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0054873_55	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0054873_55	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0054873_55	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0054873_56	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0054873_56	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0054873_56	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0054873_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0054873_57	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0054873_57	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-0054873_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0054873_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0054873_57	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0054873_58	PHROG	phrog_538	minor tail protein	tail
UHGV-0054873_58	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0054873_58	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0054873_58	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0054873_59	PHROG	phrog_1220	head protein	head and packaging
UHGV-0054873_59	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0054873_59	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0054873_61	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0054873_62	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0054873_62	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0054873_62	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0054873_63	PHROG	phrog_2310	NA	unknown function
UHGV-0054873_63	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0054873_65	Structural annotation	PF16938	NA	NA
UHGV-0054873_66	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0054873_66	PHROG	phrog_2649	endolysin	lysis
UHGV-0054873_66	UniRef90	UniRef90_B1C9L9	Putative peptidoglycan binding domain protein	NA
UHGV-0054873_66	eggNOG-mapper	445971.ANASTE_02319	Peptidase M15	NA
UHGV-0054873_66	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0054873_66	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0054873_66	COG	COG3108	NA	NA
UHGV-0054873_66	Structural annotation	PF05951, PF01471, COG3108	NA	NA
UHGV-0054873_67	PHROG	phrog_2329	NA	unknown function
UHGV-0054873_68	PHROG	phrog_14664	NA	unknown function
UHGV-0054873_68	Structural annotation	PF00644, COG5654	NA	NA