UHGV-0055256

Genome information

Genome length 35,655 bps

CDS count 57

Completeness 92.10% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055256
vOTU ID	vOTU-073801
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51840
BioSample	SAMEA2156906
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.91
Jumbo phage	No

Genome content
Genome length	35,655 bps
GC content	46.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.10%
Average CDS length	568.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055256_1	KOfam	K07576	K07576; metallo-beta-lactamase family protein	NA
UHGV-0055256_1	PHROG	phrog_36352	NA	unknown function
UHGV-0055256_1	UniRef90	UniRef90_A0A1Q6R3I3	MBL fold hydrolase	NA
UHGV-0055256_1	eggNOG-mapper	626939.HMPREF9443_00087	Metallo-beta-lactamase domain protein	NA
UHGV-0055256_1	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0055256_1	Pfam	PF10996	Beta-Casp domain	Beta-Casp
UHGV-0055256_1	Pfam	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain	RMMBL
UHGV-0055256_1	COG	COG1236	RNA processing exonuclease, beta-lactamase fold, Cft2 family	NA
UHGV-0055256_1	Structural annotation	PF16661, PF10996, MF_01491, TIGR03675, COG1782	NA	NA
UHGV-0055256_3	UniRef90	UniRef90_UPI000C187A9B	KilA-N domain-containing protein	NA
UHGV-0055256_3	eggNOG-mapper	653733.Selin_1708	AntA/AntB antirepressor	NA
UHGV-0055256_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0055256_4	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0055256_4	UniRef90	UniRef90_UPI0003FD2D49	KilA-N domain-containing protein	NA
UHGV-0055256_4	eggNOG-mapper	626939.HMPREF9443_00090	KilA-N	NA
UHGV-0055256_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0055256_6	PHROG	phrog_435	endolysin	lysis
UHGV-0055256_6	UniRef90	UniRef90_G4Q4B5	Cell wall hydrolase/autolysin	NA
UHGV-0055256_6	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055256_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0055256_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055256_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0055256_9	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0055256_9	Structural annotation	PF14301	NA	NA
UHGV-0055256_10	PHROG	phrog_13336	NA	unknown function
UHGV-0055256_10	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0055256_11	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0055256_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0055256_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0055256_12	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0055256_12	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-0055256_12	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0055256_13	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0055256_13	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0055256_13	eggNOG-mapper	1273103.NM10_06751	tape measure	NA
UHGV-0055256_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0055256_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0055256_13	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0055256_13	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0055256_15	Structural annotation	PF11836	NA	NA
UHGV-0055256_16	PHROG	phrog_1407	major tail protein	tail
UHGV-0055256_16	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0055256_16	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0055256_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0055256_16	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0055256_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0055256_17	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0055256_17	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0055256_17	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0055256_18	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0055256_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0055256_19	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0055256_19	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0055256_19	Structural annotation	TIGR01725	NA	NA
UHGV-0055256_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0055256_21	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0055256_21	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0055256_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0055256_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0055256_22	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0055256_22	Structural annotation	PF06810	NA	NA
UHGV-0055256_25	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0055256_25	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0055256_25	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0055256_26	PHROG	phrog_145	portal protein	head and packaging
UHGV-0055256_26	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0055256_26	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0055256_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0055256_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0055256_27	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0055256_27	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0055256_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0055256_27	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0055256_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0055256_27	COG	COG5410	NA	NA
UHGV-0055256_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0055256_29	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0055256_29	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0055256_29	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0055256_29	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0055256_30	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0055256_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0055256_31	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0055256_31	eggNOG-mapper	1235799.C818_01032	NA	NA
UHGV-0055256_31	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0055256_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0055256_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0055256_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0055256_32	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0055256_32	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0055256_32	Pfam	PF06356	NA	DUF1064
UHGV-0055256_32	Structural annotation	PF06356	NA	NA
UHGV-0055256_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0055256_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0055256_34	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0055256_34	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0055256_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0055256_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0055256_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0055256_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0055256_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0055256_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0055256_36	UniRef90	UniRef90_U7UMX2	PF11753 family protein	NA
UHGV-0055256_36	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0055256_36	Pfam	PF11753	NA	DUF3310
UHGV-0055256_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0055256_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0055256_39	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0055256_39	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0055256_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0055256_39	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0055256_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0055256_39	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0055256_40	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0055256_40	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0055256_40	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0055256_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0055256_40	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0055256_40	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0055256_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0055256_41	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0055256_41	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0055256_43	PHROG	phrog_7566	NA	unknown function
UHGV-0055256_43	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0055256_44	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055256_44	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0055256_44	eggNOG-mapper	69279.BG36_21015	protein involved in exopolysaccharide biosynthesis	NA
UHGV-0055256_44	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0055256_44	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0055256_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0055256_45	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0055256_45	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0055256_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0055256_45	Structural annotation	PF05565	NA	NA
UHGV-0055256_47	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0055256_47	eggNOG-mapper	941824.TCEL_01896	Lysin motif	NA
UHGV-0055256_47	COG	COG1388	LysM repeat	NA
UHGV-0055256_47	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0055256_48	eggNOG-mapper	1121272.KB903249_gene1323	Helix-turn-helix domain	NA
UHGV-0055256_48	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0055256_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055256_50	UniRef90	UniRef90_A0A0M2NHZ6	NA	NA
UHGV-0055256_50	eggNOG-mapper	1540092.A0A0A0RSY9_9CAUD	transferase activity, transferring alkyl or aryl (other than methyl) groups	NA
UHGV-0055256_50	Structural annotation	PF17375	NA	NA
UHGV-0055256_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0055256_51	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0055256_51	UniRef90	UniRef90_R6WX82	Prophage antirepressor	NA
UHGV-0055256_51	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0055256_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0055256_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0055256_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0055256_51	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0055256_52	UniRef90	UniRef90_A0A380NJU8	Helix-turn-helix	NA
UHGV-0055256_52	eggNOG-mapper	706434.HMPREF9429_00554	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055256_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055256_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0055256_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0055256_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0055256_53	UniRef90	UniRef90_UPI000F0C0ADD	helix-turn-helix domain-containing protein	NA
UHGV-0055256_53	eggNOG-mapper	706434.HMPREF9429_00555	carbohydrate binding	NA
UHGV-0055256_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055256_53	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0055256_53	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0055256_54	Structural annotation	PF06114	NA	NA
UHGV-0055256_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0055256_57	PHROG	phrog_95	integrase	integration and excision
UHGV-0055256_57	UniRef90	UniRef90_UPI0003608534	recombinase family protein	NA
UHGV-0055256_57	eggNOG-mapper	1121472.AQWN01000009_gene379	Resolvase, N terminal domain	NA
UHGV-0055256_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0055256_57	Pfam	PF07508	Recombinase	Recombinase
UHGV-0055256_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0055256_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0055256_57	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA