UHGV-0055272

Genome information

Genome length 24,633 bps

CDS count 29

Completeness 64.94% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055272
vOTU ID	vOTU-039851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_58685
BioSample	SAMEA2338827
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.18
Jumbo phage	No

Genome content
Genome length	24,633 bps
GC content	37.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.95%
Average CDS length	808.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055272_1	PHROG	phrog_8470	NA	unknown function
UHGV-0055272_1	UniRef90	UniRef90_UPI00130546E0	PcfJ domain-containing protein	NA
UHGV-0055272_1	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0055272_1	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0055272_2	PHROG	phrog_15077	NA	unknown function
UHGV-0055272_2	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0055272_2	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0055272_2	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0055272_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0055272_3	UniRef90	UniRef90_A0A1C5VVJ6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0055272_3	eggNOG-mapper	1116375.VEJY3_09830	NA	NA
UHGV-0055272_3	Pfam	PF14359	NA	DUF4406
UHGV-0055272_3	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0055272_3	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0055272_4	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0055272_4	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0055272_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0055272_5	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0055272_5	Structural annotation	PF02996	NA	NA
UHGV-0055272_6	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0055272_6	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0055272_6	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-0055272_6	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0055272_6	Structural annotation	PF13022	NA	NA
UHGV-0055272_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0055272_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0055272_7	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0055272_7	eggNOG-mapper	1415775.U729_2599	Phage terminase, large subunit, PBSX family	NA
UHGV-0055272_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0055272_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0055272_7	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0055272_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0055272_8	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0055272_8	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0055272_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0055272_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0055272_9	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-0055272_9	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-0055272_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0055272_9	Structural annotation	PF06152	NA	NA
UHGV-0055272_11	PHROG	phrog_1048	NA	unknown function
UHGV-0055272_11	UniRef90	UniRef90_A0A350S1T8	NA	NA
UHGV-0055272_11	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-0055272_11	Pfam	PF11195	NA	DUF2829
UHGV-0055272_11	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0055272_11	Structural annotation	PF11195	NA	NA
UHGV-0055272_12	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0055272_12	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0055272_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0055272_13	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0055272_13	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0055272_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0055272_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0055272_14	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0055272_15	PHROG	phrog_8710	NA	unknown function
UHGV-0055272_15	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0055272_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0055272_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0055272_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0055272_17	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0055272_17	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0055272_17	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0055272_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0055272_17	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0055272_18	PHROG	phrog_820	major tail protein	tail
UHGV-0055272_18	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0055272_18	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0055272_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0055272_19	PHROG	phrog_8300	NA	unknown function
UHGV-0055272_19	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0055272_19	Structural annotation	PF06896	NA	NA
UHGV-0055272_20	PHROG	phrog_8355	NA	unknown function
UHGV-0055272_20	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0055272_20	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0055272_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0055272_20	Structural annotation	PF06854	NA	NA
UHGV-0055272_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0055272_21	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0055272_21	eggNOG-mapper	679192.HMPREF9013_1293	tape measure	NA
UHGV-0055272_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0055272_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0055272_22	PHROG	phrog_1194	NA	unknown function
UHGV-0055272_22	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0055272_22	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0055272_23	PHROG	phrog_1401	NA	unknown function
UHGV-0055272_23	UniRef90	UniRef90_UPI001D00FC65	NA	NA
UHGV-0055272_23	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0055272_23	Structural annotation	PF07761	NA	NA
UHGV-0055272_24	PHROG	phrog_6616	tail protein	tail
UHGV-0055272_24	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0055272_24	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0055272_24	COG	COG4926	Phage-related protein	NA
UHGV-0055272_24	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0055272_28	PHROG	phrog_199	holin	lysis
UHGV-0055272_28	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0055272_28	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0055272_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0055272_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0055272_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0055272_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0055272_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0055272_29	PHROG	phrog_291	endolysin	lysis
UHGV-0055272_29	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0055272_29	eggNOG-mapper	469596.HMPREF9488_01959	Glycosyl hydrolase family 25	NA
UHGV-0055272_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0055272_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0055272_29	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA